Hb_003938_070

Information

Type -
Description -
Location Contig3938: 82386-83532
Sequence    

Annotation

kegg
ID rcu:RCOM_0463530
description ring finger protein, putative
nr
ID XP_002532367.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID B9T298
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0463530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003938_070 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_018869_020 0.2830260397 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
3 Hb_003813_160 0.3100246753 - - -
4 Hb_003638_070 0.3184718448 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
5 Hb_000753_190 0.3303961582 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
6 Hb_000003_360 0.3360701167 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
7 Hb_001204_020 0.3424357715 - - Uncharacterized protein TCM_021965 [Theobroma cacao]
8 Hb_107221_010 0.3448709204 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_014440_010 0.3463160668 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
10 Hb_001335_050 0.3476985355 - - -
11 Hb_101133_020 0.3477514884 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]
12 Hb_000434_020 0.3489362824 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
13 Hb_003688_070 0.3505551703 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
14 Hb_011249_050 0.3519810366 - - -
15 Hb_092820_020 0.3538142762 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000258_450 0.3540960373 - - -
17 Hb_065866_010 0.3565753742 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
18 Hb_058722_010 0.3607575637 - - -
19 Hb_057207_010 0.3612900513 - - hypothetical protein F383_17010 [Gossypium arboreum]
20 Hb_001741_070 0.368316047 rubber biosynthesis Gene Name: SRPP7 unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_003938_070 Hb_003938_070 Hb_018869_020 Hb_018869_020 Hb_003938_070--Hb_018869_020 Hb_003813_160 Hb_003813_160 Hb_003938_070--Hb_003813_160 Hb_003638_070 Hb_003638_070 Hb_003938_070--Hb_003638_070 Hb_000753_190 Hb_000753_190 Hb_003938_070--Hb_000753_190 Hb_000003_360 Hb_000003_360 Hb_003938_070--Hb_000003_360 Hb_001204_020 Hb_001204_020 Hb_003938_070--Hb_001204_020 Hb_003124_140 Hb_003124_140 Hb_018869_020--Hb_003124_140 Hb_000434_020 Hb_000434_020 Hb_018869_020--Hb_000434_020 Hb_002526_020 Hb_002526_020 Hb_018869_020--Hb_002526_020 Hb_002759_110 Hb_002759_110 Hb_018869_020--Hb_002759_110 Hb_000500_210 Hb_000500_210 Hb_018869_020--Hb_000500_210 Hb_001233_040 Hb_001233_040 Hb_003813_160--Hb_001233_040 Hb_001604_050 Hb_001604_050 Hb_003813_160--Hb_001604_050 Hb_033661_010 Hb_033661_010 Hb_003813_160--Hb_033661_010 Hb_184403_020 Hb_184403_020 Hb_003813_160--Hb_184403_020 Hb_003813_160--Hb_000753_190 Hb_011249_050 Hb_011249_050 Hb_003813_160--Hb_011249_050 Hb_000175_320 Hb_000175_320 Hb_003638_070--Hb_000175_320 Hb_003038_190 Hb_003038_190 Hb_003638_070--Hb_003038_190 Hb_003638_070--Hb_000753_190 Hb_023711_010 Hb_023711_010 Hb_003638_070--Hb_023711_010 Hb_000577_090 Hb_000577_090 Hb_003638_070--Hb_000577_090 Hb_000487_230 Hb_000487_230 Hb_003638_070--Hb_000487_230 Hb_000753_190--Hb_023711_010 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_000402_100 Hb_000402_100 Hb_000003_360--Hb_000402_100 Hb_000156_210 Hb_000156_210 Hb_000003_360--Hb_000156_210 Hb_000191_080 Hb_000191_080 Hb_000003_360--Hb_000191_080 Hb_001435_020 Hb_001435_020 Hb_000003_360--Hb_001435_020 Hb_101430_010 Hb_101430_010 Hb_000003_360--Hb_101430_010 Hb_000530_120 Hb_000530_120 Hb_000003_360--Hb_000530_120 Hb_001204_020--Hb_000402_100 Hb_000154_040 Hb_000154_040 Hb_001204_020--Hb_000154_040 Hb_001204_020--Hb_000003_360 Hb_003124_020 Hb_003124_020 Hb_001204_020--Hb_003124_020 Hb_001204_020--Hb_011249_050 Hb_153216_010 Hb_153216_010 Hb_001204_020--Hb_153216_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0249101 0.020809 0 0 0.0467102 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0571537 0.224734 0 0.0362406 0.0912776

CAGE analysis