Hb_003124_140

Information

Type -
Description -
Location Contig3124: 67005-67913
Sequence    

Annotation

kegg
ID cmo:103494860
description costars family protein
nr
ID KGN53893.1
description hypothetical protein Csa_4G182240 [Cucumis sativus]
swissprot
ID Q6AVK1
description Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1
trembl
ID A0A0A0KWI0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182240 PE=4 SV=1
Gene Ontology
ID GO:0007030
description costars family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33025: 67597-68324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003124_140 0.0 - - hypothetical protein Csa_4G182240 [Cucumis sativus]
2 Hb_002526_020 0.2332303928 - - -
3 Hb_018869_020 0.2554872148 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
4 Hb_000434_020 0.2625765989 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
5 Hb_012163_030 0.2637161296 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
6 Hb_000804_030 0.2670641518 - - Protein C14orf111, putative [Ricinus communis]
7 Hb_008954_010 0.2743621419 - - -
8 Hb_001348_110 0.278911504 - - PREDICTED: esterase-like [Jatropha curcas]
9 Hb_011224_040 0.2827740971 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
10 Hb_003376_380 0.2875915524 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
11 Hb_001140_240 0.2922083373 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_000284_190 0.2931580609 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_002903_010 0.3044169779 - - 60S ribosomal protein L37-3 [Morus notabilis]
14 Hb_006588_010 0.3138279353 - - -
15 Hb_003784_050 0.3186818559 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
16 Hb_007807_010 0.3204329647 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
17 Hb_005725_110 0.3204611411 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002759_110 0.321120601 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]
19 Hb_000046_200 0.3228190767 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
20 Hb_002392_050 0.3256057775 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_003124_140 Hb_003124_140 Hb_002526_020 Hb_002526_020 Hb_003124_140--Hb_002526_020 Hb_018869_020 Hb_018869_020 Hb_003124_140--Hb_018869_020 Hb_000434_020 Hb_000434_020 Hb_003124_140--Hb_000434_020 Hb_012163_030 Hb_012163_030 Hb_003124_140--Hb_012163_030 Hb_000804_030 Hb_000804_030 Hb_003124_140--Hb_000804_030 Hb_008954_010 Hb_008954_010 Hb_003124_140--Hb_008954_010 Hb_003784_050 Hb_003784_050 Hb_002526_020--Hb_003784_050 Hb_011224_040 Hb_011224_040 Hb_002526_020--Hb_011224_040 Hb_100180_010 Hb_100180_010 Hb_002526_020--Hb_100180_010 Hb_003376_380 Hb_003376_380 Hb_002526_020--Hb_003376_380 Hb_000500_210 Hb_000500_210 Hb_002526_020--Hb_000500_210 Hb_002526_020--Hb_000434_020 Hb_018869_020--Hb_000434_020 Hb_003938_070 Hb_003938_070 Hb_018869_020--Hb_003938_070 Hb_018869_020--Hb_002526_020 Hb_002759_110 Hb_002759_110 Hb_018869_020--Hb_002759_110 Hb_018869_020--Hb_000500_210 Hb_000434_020--Hb_011224_040 Hb_000434_020--Hb_000500_210 Hb_065866_010 Hb_065866_010 Hb_000434_020--Hb_065866_010 Hb_000434_020--Hb_002759_110 Hb_187024_070 Hb_187024_070 Hb_000434_020--Hb_187024_070 Hb_000613_150 Hb_000613_150 Hb_012163_030--Hb_000613_150 Hb_000317_530 Hb_000317_530 Hb_012163_030--Hb_000317_530 Hb_012163_030--Hb_008954_010 Hb_006588_010 Hb_006588_010 Hb_012163_030--Hb_006588_010 Hb_001348_110 Hb_001348_110 Hb_012163_030--Hb_001348_110 Hb_012163_030--Hb_000804_030 Hb_000804_030--Hb_001348_110 Hb_000804_030--Hb_008954_010 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_008954_010--Hb_001348_110 Hb_001520_020 Hb_001520_020 Hb_008954_010--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_008954_010--Hb_000011_340 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166055 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35913 2.86096 0 0.333602 0.527801

CAGE analysis