Hb_018464_060

Information

Type -
Description -
Location Contig18464: 34093-40947
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018464_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000455_100 0.2712890423 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_001956_030 0.2728263898 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
4 Hb_000084_040 0.2758270975 - - hypothetical protein RCOM_1007940 [Ricinus communis]
5 Hb_003106_120 0.284355015 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
6 Hb_131060_010 0.3004264588 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
7 Hb_005285_010 0.3009334002 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
8 Hb_007808_020 0.312028474 - - -
9 Hb_026048_060 0.3172030875 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_054362_010 0.3175937399 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
11 Hb_127993_010 0.3201806871 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
12 Hb_135008_010 0.3269906526 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_000350_080 0.3272979492 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
14 Hb_169574_010 0.3299995073 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
15 Hb_048874_010 0.330691712 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
16 Hb_005799_040 0.3324665478 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
17 Hb_008246_050 0.3324799588 - - -
18 Hb_089173_010 0.3333054282 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_008014_030 0.3350668731 - - Aquaporin NIP1.1, putative [Ricinus communis]
20 Hb_007125_010 0.3351392736 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_018464_060 Hb_018464_060 Hb_000455_100 Hb_000455_100 Hb_018464_060--Hb_000455_100 Hb_001956_030 Hb_001956_030 Hb_018464_060--Hb_001956_030 Hb_000084_040 Hb_000084_040 Hb_018464_060--Hb_000084_040 Hb_003106_120 Hb_003106_120 Hb_018464_060--Hb_003106_120 Hb_131060_010 Hb_131060_010 Hb_018464_060--Hb_131060_010 Hb_005285_010 Hb_005285_010 Hb_018464_060--Hb_005285_010 Hb_000926_130 Hb_000926_130 Hb_000455_100--Hb_000926_130 Hb_008643_010 Hb_008643_010 Hb_000455_100--Hb_008643_010 Hb_008779_010 Hb_008779_010 Hb_000455_100--Hb_008779_010 Hb_000056_330 Hb_000056_330 Hb_000455_100--Hb_000056_330 Hb_002849_150 Hb_002849_150 Hb_000455_100--Hb_002849_150 Hb_006683_010 Hb_006683_010 Hb_000455_100--Hb_006683_010 Hb_054362_010 Hb_054362_010 Hb_001956_030--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_001956_030--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_001956_030--Hb_169574_010 Hb_089173_010 Hb_089173_010 Hb_001956_030--Hb_089173_010 Hb_048874_010 Hb_048874_010 Hb_001956_030--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_001956_030--Hb_005799_040 Hb_011316_120 Hb_011316_120 Hb_000084_040--Hb_011316_120 Hb_080653_010 Hb_080653_010 Hb_000084_040--Hb_080653_010 Hb_000084_040--Hb_005285_010 Hb_004157_110 Hb_004157_110 Hb_000084_040--Hb_004157_110 Hb_008516_040 Hb_008516_040 Hb_000084_040--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_000084_040--Hb_155384_010 Hb_002486_010 Hb_002486_010 Hb_003106_120--Hb_002486_010 Hb_013766_010 Hb_013766_010 Hb_003106_120--Hb_013766_010 Hb_003435_060 Hb_003435_060 Hb_003106_120--Hb_003435_060 Hb_001565_110 Hb_001565_110 Hb_003106_120--Hb_001565_110 Hb_007747_180 Hb_007747_180 Hb_003106_120--Hb_007747_180 Hb_002253_060 Hb_002253_060 Hb_003106_120--Hb_002253_060 Hb_007808_020 Hb_007808_020 Hb_131060_010--Hb_007808_020 Hb_011016_010 Hb_011016_010 Hb_131060_010--Hb_011016_010 Hb_000350_080 Hb_000350_080 Hb_131060_010--Hb_000350_080 Hb_001959_150 Hb_001959_150 Hb_131060_010--Hb_001959_150 Hb_028486_070 Hb_028486_070 Hb_131060_010--Hb_028486_070 Hb_001080_010 Hb_001080_010 Hb_131060_010--Hb_001080_010 Hb_162126_010 Hb_162126_010 Hb_005285_010--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_005285_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_005285_010--Hb_125847_010 Hb_008246_050 Hb_008246_050 Hb_005285_010--Hb_008246_050 Hb_005285_010--Hb_005799_040 Hb_005285_010--Hb_048874_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00496572 0.0044653 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0107668 0.0412289 0.0469596 0

CAGE analysis