Hb_015978_080

Information

Type -
Description -
Location Contig15978: 39287-40009
Sequence    

Annotation

kegg
ID rcu:RCOM_1347390
description hypothetical protein
nr
ID XP_002515296.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9RNF7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347390 PE=4 SV=1
Gene Ontology
ID GO:0006950
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_151380_010 0.0821239496 - - ribosomal protein S4 [Hevea brasiliensis]
3 Hb_000676_320 0.1117191308 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
4 Hb_003847_070 0.1175947439 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
5 Hb_003038_060 0.1213311354 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
6 Hb_000254_020 0.1223386394 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
7 Hb_003747_090 0.1224778375 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_002785_040 0.1226948974 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
9 Hb_000083_180 0.1254110682 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
10 Hb_176135_010 0.1261389689 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_005276_080 0.1267323023 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
12 Hb_005375_090 0.1268328132 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
13 Hb_001006_160 0.1287302449 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
14 Hb_000692_090 0.1291403564 - - -
15 Hb_005605_020 0.1291615927 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
16 Hb_107748_010 0.1292662502 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_003020_120 0.1293980689 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
18 Hb_001621_090 0.129549203 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
19 Hb_082402_020 0.1302397277 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
20 Hb_004525_010 0.1304096324 - - late embryogenesis abundant, putative [Ricinus communis]

Gene co-expression network

sample Hb_015978_080 Hb_015978_080 Hb_151380_010 Hb_151380_010 Hb_015978_080--Hb_151380_010 Hb_000676_320 Hb_000676_320 Hb_015978_080--Hb_000676_320 Hb_003847_070 Hb_003847_070 Hb_015978_080--Hb_003847_070 Hb_003038_060 Hb_003038_060 Hb_015978_080--Hb_003038_060 Hb_000254_020 Hb_000254_020 Hb_015978_080--Hb_000254_020 Hb_003747_090 Hb_003747_090 Hb_015978_080--Hb_003747_090 Hb_002890_170 Hb_002890_170 Hb_151380_010--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_151380_010--Hb_082402_020 Hb_002400_200 Hb_002400_200 Hb_151380_010--Hb_002400_200 Hb_153106_010 Hb_153106_010 Hb_151380_010--Hb_153106_010 Hb_151380_010--Hb_003747_090 Hb_000083_180 Hb_000083_180 Hb_000676_320--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_000676_320--Hb_005276_080 Hb_009193_020 Hb_009193_020 Hb_000676_320--Hb_009193_020 Hb_001006_160 Hb_001006_160 Hb_000676_320--Hb_001006_160 Hb_000450_050 Hb_000450_050 Hb_000676_320--Hb_000450_050 Hb_003020_120 Hb_003020_120 Hb_000676_320--Hb_003020_120 Hb_176135_010 Hb_176135_010 Hb_003847_070--Hb_176135_010 Hb_001856_240 Hb_001856_240 Hb_003847_070--Hb_001856_240 Hb_003847_070--Hb_000083_180 Hb_003847_070--Hb_003020_120 Hb_008748_050 Hb_008748_050 Hb_003847_070--Hb_008748_050 Hb_000221_130 Hb_000221_130 Hb_003847_070--Hb_000221_130 Hb_001717_060 Hb_001717_060 Hb_003038_060--Hb_001717_060 Hb_000230_420 Hb_000230_420 Hb_003038_060--Hb_000230_420 Hb_001862_040 Hb_001862_040 Hb_003038_060--Hb_001862_040 Hb_013405_110 Hb_013405_110 Hb_003038_060--Hb_013405_110 Hb_002785_040 Hb_002785_040 Hb_003038_060--Hb_002785_040 Hb_000531_100 Hb_000531_100 Hb_003038_060--Hb_000531_100 Hb_107748_010 Hb_107748_010 Hb_000254_020--Hb_107748_010 Hb_005375_090 Hb_005375_090 Hb_000254_020--Hb_005375_090 Hb_000254_020--Hb_003747_090 Hb_000254_020--Hb_001006_160 Hb_000254_020--Hb_002785_040 Hb_004525_010 Hb_004525_010 Hb_000254_020--Hb_004525_010 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_002785_040 Hb_003747_090--Hb_013405_110 Hb_004129_170 Hb_004129_170 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.060461 3.12127 0.780285 0.0704728 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.212828 0 6.0922

CAGE analysis