Hb_151380_010

Information

Type -
Description -
Location Contig151380: 5367-5702
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00040
description rps4; ribosomal protein S4
nr
ID YP_004327664.1
description ribosomal protein S4 [Hevea brasiliensis]
swissprot
ID A4GYR2
description 30S ribosomal protein S4, chloroplastic OS=Populus trichocarpa GN=rps4 PE=3 SV=1
trembl
ID F2X0B8
description 30S ribosomal protein S4, chloroplastic OS=Hevea brasiliensis GN=rps4 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein s4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_151380_010 0.0 - - ribosomal protein S4 [Hevea brasiliensis]
2 Hb_015978_080 0.0821239496 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002890_170 0.0972559234 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
4 Hb_082402_020 0.0986339204 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
5 Hb_002400_200 0.107266696 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
6 Hb_153106_010 0.1083432209 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
7 Hb_003747_090 0.1085195908 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_005375_090 0.1087568408 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_004129_170 0.1087957029 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
10 Hb_002374_480 0.1105687835 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_001862_040 0.1125043364 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
12 Hb_002014_140 0.1140130248 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
13 Hb_180007_010 0.1154237039 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000334_290 0.1161158202 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_000676_320 0.1164327917 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
16 Hb_000251_160 0.116915153 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_000825_010 0.1178134612 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
18 Hb_002785_040 0.117951131 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
19 Hb_001936_100 0.1183562504 - - conserved hypothetical protein [Ricinus communis]
20 Hb_013405_110 0.1194521791 - - multidrug resistance pump, putative [Ricinus communis]

Gene co-expression network

sample Hb_151380_010 Hb_151380_010 Hb_015978_080 Hb_015978_080 Hb_151380_010--Hb_015978_080 Hb_002890_170 Hb_002890_170 Hb_151380_010--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_151380_010--Hb_082402_020 Hb_002400_200 Hb_002400_200 Hb_151380_010--Hb_002400_200 Hb_153106_010 Hb_153106_010 Hb_151380_010--Hb_153106_010 Hb_003747_090 Hb_003747_090 Hb_151380_010--Hb_003747_090 Hb_000676_320 Hb_000676_320 Hb_015978_080--Hb_000676_320 Hb_003847_070 Hb_003847_070 Hb_015978_080--Hb_003847_070 Hb_003038_060 Hb_003038_060 Hb_015978_080--Hb_003038_060 Hb_000254_020 Hb_000254_020 Hb_015978_080--Hb_000254_020 Hb_015978_080--Hb_003747_090 Hb_002890_170--Hb_082402_020 Hb_002890_170--Hb_002400_200 Hb_002890_170--Hb_003747_090 Hb_005375_090 Hb_005375_090 Hb_002890_170--Hb_005375_090 Hb_004129_170 Hb_004129_170 Hb_002890_170--Hb_004129_170 Hb_002890_170--Hb_153106_010 Hb_001862_040 Hb_001862_040 Hb_082402_020--Hb_001862_040 Hb_082402_020--Hb_002400_200 Hb_082402_020--Hb_003747_090 Hb_082402_020--Hb_005375_090 Hb_000334_290 Hb_000334_290 Hb_082402_020--Hb_000334_290 Hb_001936_100 Hb_001936_100 Hb_002400_200--Hb_001936_100 Hb_001053_070 Hb_001053_070 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_000373_210 Hb_000373_210 Hb_002400_200--Hb_000373_210 Hb_001049_130 Hb_001049_130 Hb_002400_200--Hb_001049_130 Hb_180007_010 Hb_180007_010 Hb_153106_010--Hb_180007_010 Hb_153106_010--Hb_002374_480 Hb_153106_010--Hb_004129_170 Hb_132840_050 Hb_132840_050 Hb_153106_010--Hb_132840_050 Hb_000251_160 Hb_000251_160 Hb_153106_010--Hb_000251_160 Hb_003747_090--Hb_005375_090 Hb_002785_040 Hb_002785_040 Hb_003747_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.17816 1.46701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.337435 0 11.052

CAGE analysis