Hb_012754_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12754: 41073-42853
Sequence    

Annotation

kegg
ID rcu:RCOM_1118640
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002525331.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9SH62
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1118640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012754_040 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_113250_010 0.2702219414 - - -
3 Hb_001587_010 0.3075888407 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
4 Hb_000645_110 0.3110819309 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
5 Hb_012807_010 0.3156800625 - - -
6 Hb_003160_020 0.3378363196 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
7 Hb_005273_040 0.3476771955 - - -
8 Hb_011928_010 0.3500547675 - - -
9 Hb_002407_080 0.3539789351 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
10 Hb_003963_020 0.3589907924 - - PREDICTED: uncharacterized protein LOC100256672 [Vitis vinifera]
11 Hb_046994_010 0.3600722426 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
12 Hb_123051_020 0.3611467991 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
13 Hb_028872_060 0.3808650069 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
14 Hb_004242_190 0.3810587004 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
15 Hb_000209_110 0.3813705365 - - PREDICTED: receptor-like protein kinase BRI1-like 3 [Jatropha curcas]
16 Hb_000805_320 0.3818750473 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
17 Hb_001232_120 0.3819069245 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
18 Hb_001959_300 0.3853405478 - - PREDICTED: 3-isopropylmalate dehydratase large subunit [Jatropha curcas]
19 Hb_004668_100 0.3859472078 - - -
20 Hb_003073_180 0.3862986936 - - hypothetical protein JCGZ_20198 [Jatropha curcas]

Gene co-expression network

sample Hb_012754_040 Hb_012754_040 Hb_113250_010 Hb_113250_010 Hb_012754_040--Hb_113250_010 Hb_001587_010 Hb_001587_010 Hb_012754_040--Hb_001587_010 Hb_000645_110 Hb_000645_110 Hb_012754_040--Hb_000645_110 Hb_012807_010 Hb_012807_010 Hb_012754_040--Hb_012807_010 Hb_003160_020 Hb_003160_020 Hb_012754_040--Hb_003160_020 Hb_005273_040 Hb_005273_040 Hb_012754_040--Hb_005273_040 Hb_000758_040 Hb_000758_040 Hb_113250_010--Hb_000758_040 Hb_000816_120 Hb_000816_120 Hb_113250_010--Hb_000816_120 Hb_113250_010--Hb_000645_110 Hb_001190_060 Hb_001190_060 Hb_113250_010--Hb_001190_060 Hb_003636_070 Hb_003636_070 Hb_113250_010--Hb_003636_070 Hb_002407_080 Hb_002407_080 Hb_001587_010--Hb_002407_080 Hb_001587_010--Hb_005273_040 Hb_002299_050 Hb_002299_050 Hb_001587_010--Hb_002299_050 Hb_009848_010 Hb_009848_010 Hb_001587_010--Hb_009848_010 Hb_000209_110 Hb_000209_110 Hb_001587_010--Hb_000209_110 Hb_001587_010--Hb_003160_020 Hb_003073_180 Hb_003073_180 Hb_000645_110--Hb_003073_180 Hb_080147_100 Hb_080147_100 Hb_000645_110--Hb_080147_100 Hb_140049_050 Hb_140049_050 Hb_000645_110--Hb_140049_050 Hb_000645_110--Hb_000209_110 Hb_000317_360 Hb_000317_360 Hb_000645_110--Hb_000317_360 Hb_000157_130 Hb_000157_130 Hb_000645_110--Hb_000157_130 Hb_001959_300 Hb_001959_300 Hb_012807_010--Hb_001959_300 Hb_005009_020 Hb_005009_020 Hb_012807_010--Hb_005009_020 Hb_003963_020 Hb_003963_020 Hb_012807_010--Hb_003963_020 Hb_003209_030 Hb_003209_030 Hb_012807_010--Hb_003209_030 Hb_000331_320 Hb_000331_320 Hb_012807_010--Hb_000331_320 Hb_116349_010 Hb_116349_010 Hb_012807_010--Hb_116349_010 Hb_001507_100 Hb_001507_100 Hb_003160_020--Hb_001507_100 Hb_004242_190 Hb_004242_190 Hb_003160_020--Hb_004242_190 Hb_001104_240 Hb_001104_240 Hb_003160_020--Hb_001104_240 Hb_002972_020 Hb_002972_020 Hb_003160_020--Hb_002972_020 Hb_002028_220 Hb_002028_220 Hb_003160_020--Hb_002028_220 Hb_028872_060 Hb_028872_060 Hb_003160_020--Hb_028872_060 Hb_005273_040--Hb_002407_080 Hb_005273_040--Hb_002299_050 Hb_001329_240 Hb_001329_240 Hb_005273_040--Hb_001329_240 Hb_001278_070 Hb_001278_070 Hb_005273_040--Hb_001278_070 Hb_005273_040--Hb_000209_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.010009 0 0 0.0793463 0.0636377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0550997 0.0433508 0 0.250555 0

CAGE analysis