Hb_010589_030

Information

Type -
Description -
Location Contig10589: 14750-15106
Sequence    

Annotation

kegg
ID rcu:RCOM_0885330
description lipid binding protein, putative
nr
ID XP_012069305.1
description PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01921: 12169-14242
cDNA
(Sanger)
(ID:Location)		 004_L08.ab1: 12646-13995 , 035_K22.ab1: 12646-13995 , 037_H11.ab1: 14032-14140 , 048_P12.ab1: 12646-13995 , 053_E19.ab1: 12646-13995

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_030 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
2 Hb_001085_200 0.1464891238 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
3 Hb_002188_150 0.1531765481 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012940_020 0.1593944148 - - zeaxanthin epoxidase, putative [Ricinus communis]
5 Hb_000101_340 0.1619455846 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Ricinus communis]
6 Hb_054865_040 0.1682903825 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
7 Hb_009771_080 0.1710651033 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_003336_020 0.1736020935 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
9 Hb_028960_010 0.1739719099 - - phosphoglycerate kinase, putative [Ricinus communis]
10 Hb_000367_220 0.1760459168 - - hypothetical protein RCOM_1470580 [Ricinus communis]
11 Hb_000076_070 0.1760553399 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
12 Hb_068804_110 0.176847467 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
13 Hb_000415_080 0.176953639 - - -
14 Hb_003622_050 0.1790919918 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
15 Hb_163950_040 0.1803164044 - - PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Jatropha curcas]
16 Hb_003253_030 0.1810820207 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
17 Hb_156850_020 0.1843340539 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
18 Hb_015807_020 0.1868258901 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_106552_030 0.1912895752 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
20 Hb_040245_010 0.1921836591 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_010589_030 Hb_010589_030 Hb_001085_200 Hb_001085_200 Hb_010589_030--Hb_001085_200 Hb_002188_150 Hb_002188_150 Hb_010589_030--Hb_002188_150 Hb_012940_020 Hb_012940_020 Hb_010589_030--Hb_012940_020 Hb_000101_340 Hb_000101_340 Hb_010589_030--Hb_000101_340 Hb_054865_040 Hb_054865_040 Hb_010589_030--Hb_054865_040 Hb_009771_080 Hb_009771_080 Hb_010589_030--Hb_009771_080 Hb_003253_030 Hb_003253_030 Hb_001085_200--Hb_003253_030 Hb_068804_110 Hb_068804_110 Hb_001085_200--Hb_068804_110 Hb_001146_030 Hb_001146_030 Hb_001085_200--Hb_001146_030 Hb_003622_050 Hb_003622_050 Hb_001085_200--Hb_003622_050 Hb_001085_200--Hb_002188_150 Hb_001085_200--Hb_054865_040 Hb_002188_150--Hb_003622_050 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_001053_050 Hb_001053_050 Hb_002188_150--Hb_001053_050 Hb_001775_010 Hb_001775_010 Hb_002188_150--Hb_001775_010 Hb_077976_010 Hb_077976_010 Hb_002188_150--Hb_077976_010 Hb_002188_150--Hb_001146_030 Hb_028960_010 Hb_028960_010 Hb_012940_020--Hb_028960_010 Hb_156850_020 Hb_156850_020 Hb_012940_020--Hb_156850_020 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_012940_020--Hb_000359_070 Hb_000101_340--Hb_169492_010 Hb_011537_130 Hb_011537_130 Hb_000101_340--Hb_011537_130 Hb_018202_040 Hb_018202_040 Hb_000101_340--Hb_018202_040 Hb_005675_030 Hb_005675_030 Hb_000101_340--Hb_005675_030 Hb_000101_340--Hb_002188_150 Hb_080048_030 Hb_080048_030 Hb_000101_340--Hb_080048_030 Hb_001856_290 Hb_001856_290 Hb_054865_040--Hb_001856_290 Hb_015807_020 Hb_015807_020 Hb_054865_040--Hb_015807_020 Hb_054865_040--Hb_001146_030 Hb_007101_090 Hb_007101_090 Hb_054865_040--Hb_007101_090 Hb_052139_010 Hb_052139_010 Hb_054865_040--Hb_052139_010 Hb_000076_070 Hb_000076_070 Hb_009771_080--Hb_000076_070 Hb_163950_040 Hb_163950_040 Hb_009771_080--Hb_163950_040 Hb_001691_180 Hb_001691_180 Hb_009771_080--Hb_001691_180 Hb_123689_010 Hb_123689_010 Hb_009771_080--Hb_123689_010 Hb_000679_320 Hb_000679_320 Hb_009771_080--Hb_000679_320 Hb_001517_010 Hb_001517_010 Hb_009771_080--Hb_001517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.21033 0.0939435 0.714847 1.3677 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.250587 0.196911 0 0.347069 7.9563

CAGE analysis