Hb_007595_010

Information

Type -
Description -
Location Contig7595: 36867-37523
Sequence    

Annotation

kegg
ID mtr:MTR_6g091160
description Photosystem II reaction center protein K
nr
ID XP_003620833.1
description Photosystem II reaction center protein K [Medicago truncatula]
swissprot
ID P62104
description Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1
trembl
ID G7JR91
description Photosystem II reaction center protein OS=Medicago truncatula GN=MTR_4g019000 PE=3 SV=1
Gene Ontology
ID GO:0009535
description photosystem ii protein i

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_010 0.0 - - Photosystem II reaction center protein K [Medicago truncatula]
2 Hb_000922_400 0.134674095 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
3 Hb_013749_040 0.1390766796 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
4 Hb_002783_280 0.1403777986 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
5 Hb_000345_550 0.1438291144 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
6 Hb_005784_010 0.1459924616 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
7 Hb_002471_130 0.1493094708 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
8 Hb_031984_020 0.1526777287 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004223_060 0.1548721513 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
10 Hb_001159_230 0.1560518692 - - Kinesin heavy chain, putative [Ricinus communis]
11 Hb_006002_050 0.1570284208 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
12 Hb_006922_120 0.1573953354 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
13 Hb_000140_320 0.1584900739 - - delta-8 sphingolipid desaturase [Vernicia fordii]
14 Hb_033720_030 0.1591818228 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_009070_020 0.1601320818 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
16 Hb_004525_090 0.1601566568 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
17 Hb_000077_250 0.1612905857 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
18 Hb_009783_010 0.1616640389 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
19 Hb_007625_010 0.1619319554 - - conserved hypothetical protein [Ricinus communis]
20 Hb_162472_010 0.1628804836 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007595_010 Hb_007595_010 Hb_000922_400 Hb_000922_400 Hb_007595_010--Hb_000922_400 Hb_013749_040 Hb_013749_040 Hb_007595_010--Hb_013749_040 Hb_002783_280 Hb_002783_280 Hb_007595_010--Hb_002783_280 Hb_000345_550 Hb_000345_550 Hb_007595_010--Hb_000345_550 Hb_005784_010 Hb_005784_010 Hb_007595_010--Hb_005784_010 Hb_002471_130 Hb_002471_130 Hb_007595_010--Hb_002471_130 Hb_006002_050 Hb_006002_050 Hb_000922_400--Hb_006002_050 Hb_000922_400--Hb_000345_550 Hb_033720_030 Hb_033720_030 Hb_000922_400--Hb_033720_030 Hb_000922_400--Hb_005784_010 Hb_012055_070 Hb_012055_070 Hb_000922_400--Hb_012055_070 Hb_000922_400--Hb_002783_280 Hb_006922_120 Hb_006922_120 Hb_013749_040--Hb_006922_120 Hb_007113_060 Hb_007113_060 Hb_013749_040--Hb_007113_060 Hb_006977_010 Hb_006977_010 Hb_013749_040--Hb_006977_010 Hb_000140_320 Hb_000140_320 Hb_013749_040--Hb_000140_320 Hb_005440_040 Hb_005440_040 Hb_013749_040--Hb_005440_040 Hb_002311_030 Hb_002311_030 Hb_013749_040--Hb_002311_030 Hb_000317_380 Hb_000317_380 Hb_002783_280--Hb_000317_380 Hb_002783_280--Hb_006002_050 Hb_007122_020 Hb_007122_020 Hb_002783_280--Hb_007122_020 Hb_002783_280--Hb_000140_320 Hb_162472_010 Hb_162472_010 Hb_002783_280--Hb_162472_010 Hb_000413_120 Hb_000413_120 Hb_002783_280--Hb_000413_120 Hb_000345_550--Hb_005784_010 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_001951_080 Hb_001951_080 Hb_000345_550--Hb_001951_080 Hb_009783_010 Hb_009783_010 Hb_000345_550--Hb_009783_010 Hb_009023_010 Hb_009023_010 Hb_000345_550--Hb_009023_010 Hb_007904_280 Hb_007904_280 Hb_000345_550--Hb_007904_280 Hb_005784_010--Hb_001951_080 Hb_005784_010--Hb_007904_280 Hb_004223_060 Hb_004223_060 Hb_005784_010--Hb_004223_060 Hb_001819_020 Hb_001819_020 Hb_005784_010--Hb_001819_020 Hb_005784_010--Hb_009783_010 Hb_031984_020 Hb_031984_020 Hb_002471_130--Hb_031984_020 Hb_009151_010 Hb_009151_010 Hb_002471_130--Hb_009151_010 Hb_000103_450 Hb_000103_450 Hb_002471_130--Hb_000103_450 Hb_053264_010 Hb_053264_010 Hb_002471_130--Hb_053264_010 Hb_002471_130--Hb_009783_010 Hb_002471_130--Hb_006922_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.69478 10.9141 27.6348 0.944206 0.935135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.530891 0.665915 0 12.0933

CAGE analysis