Hb_005565_070

Information

Type -
Description -
Location Contig5565: 38893-39258
Sequence    

Annotation

kegg
ID rcu:RCOM_0522400
description hypothetical protein
nr
ID XP_002522765.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48553: 38811-39294
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005565_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000445_150 0.274381856 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
3 Hb_003647_020 0.2746216656 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
4 Hb_001584_130 0.2784800355 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
5 Hb_005000_130 0.2995514135 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
6 Hb_004627_010 0.3030290099 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000086_410 0.304070363 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
8 Hb_001266_070 0.3064901397 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
9 Hb_001004_080 0.3084777809 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
10 Hb_001976_060 0.3138920976 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
11 Hb_001141_250 0.3164099865 - - hypothetical protein glysoja_047929, partial [Glycine soja]
12 Hb_001675_050 0.3237006431 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
13 Hb_001675_190 0.3285231405 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
14 Hb_000796_170 0.3289722643 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
15 Hb_004525_050 0.329444681 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
16 Hb_001214_040 0.329585978 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
17 Hb_000294_050 0.3318376054 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
18 Hb_005129_010 0.3345376188 - - hypothetical protein VITISV_026364 [Vitis vinifera]
19 Hb_001221_190 0.3397729417 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
20 Hb_002311_330 0.3398131356 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_005565_070 Hb_005565_070 Hb_000445_150 Hb_000445_150 Hb_005565_070--Hb_000445_150 Hb_003647_020 Hb_003647_020 Hb_005565_070--Hb_003647_020 Hb_001584_130 Hb_001584_130 Hb_005565_070--Hb_001584_130 Hb_005000_130 Hb_005000_130 Hb_005565_070--Hb_005000_130 Hb_004627_010 Hb_004627_010 Hb_005565_070--Hb_004627_010 Hb_000086_410 Hb_000086_410 Hb_005565_070--Hb_000086_410 Hb_002596_080 Hb_002596_080 Hb_000445_150--Hb_002596_080 Hb_000417_170 Hb_000417_170 Hb_000445_150--Hb_000417_170 Hb_003994_300 Hb_003994_300 Hb_000445_150--Hb_003994_300 Hb_002157_270 Hb_002157_270 Hb_000445_150--Hb_002157_270 Hb_000445_150--Hb_001584_130 Hb_011310_040 Hb_011310_040 Hb_000445_150--Hb_011310_040 Hb_001976_060 Hb_001976_060 Hb_003647_020--Hb_001976_060 Hb_001004_080 Hb_001004_080 Hb_003647_020--Hb_001004_080 Hb_003647_020--Hb_001584_130 Hb_000317_450 Hb_000317_450 Hb_003647_020--Hb_000317_450 Hb_001049_150 Hb_001049_150 Hb_003647_020--Hb_001049_150 Hb_001623_080 Hb_001623_080 Hb_003647_020--Hb_001623_080 Hb_001584_130--Hb_001004_080 Hb_012339_010 Hb_012339_010 Hb_001584_130--Hb_012339_010 Hb_001584_130--Hb_001049_150 Hb_001584_130--Hb_003994_300 Hb_000796_170 Hb_000796_170 Hb_005000_130--Hb_000796_170 Hb_000300_660 Hb_000300_660 Hb_005000_130--Hb_000300_660 Hb_000983_040 Hb_000983_040 Hb_005000_130--Hb_000983_040 Hb_000371_100 Hb_000371_100 Hb_005000_130--Hb_000371_100 Hb_054132_010 Hb_054132_010 Hb_005000_130--Hb_054132_010 Hb_001435_020 Hb_001435_020 Hb_005000_130--Hb_001435_020 Hb_150486_010 Hb_150486_010 Hb_004627_010--Hb_150486_010 Hb_004627_010--Hb_002157_270 Hb_000950_030 Hb_000950_030 Hb_004627_010--Hb_000950_030 Hb_033683_020 Hb_033683_020 Hb_004627_010--Hb_033683_020 Hb_000925_060 Hb_000925_060 Hb_004627_010--Hb_000925_060 Hb_048702_010 Hb_048702_010 Hb_004627_010--Hb_048702_010 Hb_005170_010 Hb_005170_010 Hb_000086_410--Hb_005170_010 Hb_000004_010 Hb_000004_010 Hb_000086_410--Hb_000004_010 Hb_003669_010 Hb_003669_010 Hb_000086_410--Hb_003669_010 Hb_007477_050 Hb_007477_050 Hb_000086_410--Hb_007477_050 Hb_002079_050 Hb_002079_050 Hb_000086_410--Hb_002079_050 Hb_000703_100 Hb_000703_100 Hb_000086_410--Hb_000703_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26282 0.088854 0.894506 20.581 7.94041 7.70348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.37385 1.68199 0 0 16.8472

CAGE analysis