Hb_004757_050

Information

Type -
Description -
Location Contig4757: 54730-55142
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44498: 54627-55286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004757_050 0.0 - - -
2 Hb_000307_060 0.148993109 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_006916_070 0.1795014178 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1-like [Jatropha curcas]
4 Hb_000599_160 0.1837085833 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 21/22 [Jatropha curcas]
5 Hb_000317_170 0.1842730653 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
6 Hb_007741_140 0.1926591582 - - PREDICTED: SPX domain-containing protein 3-like isoform X2 [Populus euphratica]
7 Hb_002081_160 0.1968398812 - - hypothetical protein OsI_35059 [Oryza sativa Indica Group]
8 Hb_000030_230 0.2027005213 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
9 Hb_000928_200 0.2065850132 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
10 Hb_005183_070 0.2066728236 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
11 Hb_001680_050 0.2067538988 - - -
12 Hb_000457_120 0.2074259581 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
13 Hb_000152_520 0.208049373 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
14 Hb_000637_100 0.2099374953 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Jatropha curcas]
15 Hb_007545_220 0.2101706 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]
16 Hb_096499_010 0.2130740857 - - hypothetical protein JCGZ_14833 [Jatropha curcas]
17 Hb_000030_130 0.2132981818 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000580_210 0.2132990988 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
19 Hb_000864_050 0.2145341287 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000856_030 0.2154458329 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004757_050 Hb_004757_050 Hb_000307_060 Hb_000307_060 Hb_004757_050--Hb_000307_060 Hb_006916_070 Hb_006916_070 Hb_004757_050--Hb_006916_070 Hb_000599_160 Hb_000599_160 Hb_004757_050--Hb_000599_160 Hb_000317_170 Hb_000317_170 Hb_004757_050--Hb_000317_170 Hb_007741_140 Hb_007741_140 Hb_004757_050--Hb_007741_140 Hb_002081_160 Hb_002081_160 Hb_004757_050--Hb_002081_160 Hb_000030_230 Hb_000030_230 Hb_000307_060--Hb_000030_230 Hb_000307_060--Hb_000317_170 Hb_000307_060--Hb_000599_160 Hb_000928_200 Hb_000928_200 Hb_000307_060--Hb_000928_200 Hb_005183_070 Hb_005183_070 Hb_000307_060--Hb_005183_070 Hb_000000_260 Hb_000000_260 Hb_000307_060--Hb_000000_260 Hb_000995_020 Hb_000995_020 Hb_006916_070--Hb_000995_020 Hb_000920_120 Hb_000920_120 Hb_006916_070--Hb_000920_120 Hb_000637_100 Hb_000637_100 Hb_006916_070--Hb_000637_100 Hb_004617_010 Hb_004617_010 Hb_006916_070--Hb_004617_010 Hb_017914_020 Hb_017914_020 Hb_006916_070--Hb_017914_020 Hb_000599_160--Hb_000317_170 Hb_180980_010 Hb_180980_010 Hb_000599_160--Hb_180980_010 Hb_000864_050 Hb_000864_050 Hb_000599_160--Hb_000864_050 Hb_007545_220 Hb_007545_220 Hb_000599_160--Hb_007545_220 Hb_029791_010 Hb_029791_010 Hb_000599_160--Hb_029791_010 Hb_000317_170--Hb_000000_260 Hb_001680_050 Hb_001680_050 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000317_170--Hb_029791_010 Hb_007741_140--Hb_000317_170 Hb_007741_140--Hb_029791_010 Hb_007741_140--Hb_000000_260 Hb_152914_010 Hb_152914_010 Hb_007741_140--Hb_152914_010 Hb_007741_140--Hb_001680_050 Hb_000983_130 Hb_000983_130 Hb_007741_140--Hb_000983_130 Hb_000161_140 Hb_000161_140 Hb_002081_160--Hb_000161_140 Hb_081864_010 Hb_081864_010 Hb_002081_160--Hb_081864_010 Hb_002081_160--Hb_007741_140 Hb_039946_060 Hb_039946_060 Hb_002081_160--Hb_039946_060 Hb_103225_030 Hb_103225_030 Hb_002081_160--Hb_103225_030 Hb_002081_160--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.55185 0.413737 8.14399 0 0.111393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.857837 0.224812 0 0.20233 2.21039

CAGE analysis