Hb_007741_140

Information

Type -
Description -
Location Contig7741: 97711-99635
Sequence    

Annotation

kegg
ID pop:POPTR_0176s00240g
description hypothetical protein
nr
ID XP_011033635.1
description PREDICTED: SPX domain-containing protein 3-like isoform X2 [Populus euphratica]
swissprot
ID Q5PP62
description SPX domain-containing protein 3 OS=Arabidopsis thaliana GN=SPX3 PE=2 SV=1
trembl
ID A0A067KAG5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14570 PE=4 SV=1
Gene Ontology
ID GO:0016036
description spx domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007741_140 0.0 - - PREDICTED: SPX domain-containing protein 3-like isoform X2 [Populus euphratica]
2 Hb_000317_170 0.1261488335 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_029791_010 0.1272493559 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
4 Hb_000000_260 0.1309940639 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
5 Hb_152914_010 0.1388897096 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
6 Hb_001680_050 0.143134127 - - -
7 Hb_000983_130 0.1457887866 - - transcription factor, putative [Ricinus communis]
8 Hb_080601_010 0.1484983043 - - metallothionein 3-like protein [Hevea brasiliensis]
9 Hb_002960_030 0.1498263498 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
10 Hb_004450_090 0.1503438716 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_007579_030 0.1510587298 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_004102_200 0.1513455143 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
13 Hb_152277_010 0.1521351983 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
14 Hb_000457_120 0.1530227449 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
15 Hb_000020_200 0.1549855267 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
16 Hb_081864_010 0.1551231447 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_000307_060 0.1561554691 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
18 Hb_002081_160 0.1588372237 - - hypothetical protein OsI_35059 [Oryza sativa Indica Group]
19 Hb_180980_010 0.1588910615 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Malus domestica]
20 Hb_001936_120 0.1595780483 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007741_140 Hb_007741_140 Hb_000317_170 Hb_000317_170 Hb_007741_140--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_007741_140--Hb_029791_010 Hb_000000_260 Hb_000000_260 Hb_007741_140--Hb_000000_260 Hb_152914_010 Hb_152914_010 Hb_007741_140--Hb_152914_010 Hb_001680_050 Hb_001680_050 Hb_007741_140--Hb_001680_050 Hb_000983_130 Hb_000983_130 Hb_007741_140--Hb_000983_130 Hb_000317_170--Hb_000000_260 Hb_000317_170--Hb_001680_050 Hb_000856_030 Hb_000856_030 Hb_000317_170--Hb_000856_030 Hb_000307_060 Hb_000307_060 Hb_000317_170--Hb_000307_060 Hb_000317_170--Hb_029791_010 Hb_000599_160 Hb_000599_160 Hb_000317_170--Hb_000599_160 Hb_029791_010--Hb_000000_260 Hb_180980_010 Hb_180980_010 Hb_029791_010--Hb_180980_010 Hb_001936_120 Hb_001936_120 Hb_029791_010--Hb_001936_120 Hb_133492_010 Hb_133492_010 Hb_029791_010--Hb_133492_010 Hb_029791_010--Hb_000599_160 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000000_260--Hb_000983_130 Hb_000000_260--Hb_152914_010 Hb_000197_260 Hb_000197_260 Hb_152914_010--Hb_000197_260 Hb_000137_050 Hb_000137_050 Hb_152914_010--Hb_000137_050 Hb_152914_010--Hb_007579_030 Hb_002186_110 Hb_002186_110 Hb_152914_010--Hb_002186_110 Hb_152914_010--Hb_180980_010 Hb_001680_050--Hb_007579_030 Hb_029665_010 Hb_029665_010 Hb_001680_050--Hb_029665_010 Hb_000368_040 Hb_000368_040 Hb_001680_050--Hb_000368_040 Hb_001680_050--Hb_000197_260 Hb_001680_050--Hb_000856_030 Hb_004102_200 Hb_004102_200 Hb_000983_130--Hb_004102_200 Hb_004450_090 Hb_004450_090 Hb_000983_130--Hb_004450_090 Hb_029238_040 Hb_029238_040 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.676124 0.296553 1.97112 0.0271475 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124256 0 0 0.0592012 0.887943

CAGE analysis