Hb_002081_160

Information

Type -
Description -
Location Contig2081: 274047-291250
Sequence    

Annotation

kegg
ID vvi:100246633
description sulfotransferase 16-like
nr
ID EEC67649.1
description hypothetical protein OsI_35059 [Oryza sativa Indica Group]
swissprot
ID P52837
description Flavonol 4'-sulfotransferase OS=Flaveria chlorifolia PE=1 SV=1
trembl
ID A0A0E0F9D6
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID GO:0008146
description flavonol sulfotransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21563: 282864-283537 , PASA_asmbl_21564: 287835-288449
cDNA
(Sanger)
(ID:Location)		 023_I01.ab1: 274063-274743 , 026_C07.ab1: 274057-274743

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_160 0.0 - - hypothetical protein OsI_35059 [Oryza sativa Indica Group]
2 Hb_000161_140 0.145845883 - - PREDICTED: WEB family protein At3g51220 [Jatropha curcas]
3 Hb_081864_010 0.1513231724 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_007741_140 0.1588372237 - - PREDICTED: SPX domain-containing protein 3-like isoform X2 [Populus euphratica]
5 Hb_039946_060 0.1646710086 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
6 Hb_103225_030 0.1654677742 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
7 Hb_000000_260 0.1654732523 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
8 Hb_080601_010 0.1678442186 - - metallothionein 3-like protein [Hevea brasiliensis]
9 Hb_005741_030 0.1714779081 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
10 Hb_000307_060 0.1724794906 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
11 Hb_005305_040 0.1738895949 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
12 Hb_029791_010 0.1745324502 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
13 Hb_000020_200 0.1784757392 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
14 Hb_000749_290 0.1787782847 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
15 Hb_001405_170 0.1793013101 - - aspartyl protease family protein [Populus trichocarpa]
16 Hb_000030_230 0.1800163629 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
17 Hb_003023_030 0.1825255655 - - PREDICTED: MATE efflux family protein 5-like isoform X1 [Citrus sinensis]
18 Hb_002534_070 0.182782192 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
19 Hb_188281_010 0.1843542023 - - carboxylic ester hydrolase, putative [Ricinus communis]
20 Hb_002960_030 0.1849764098 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]

Gene co-expression network

sample Hb_002081_160 Hb_002081_160 Hb_000161_140 Hb_000161_140 Hb_002081_160--Hb_000161_140 Hb_081864_010 Hb_081864_010 Hb_002081_160--Hb_081864_010 Hb_007741_140 Hb_007741_140 Hb_002081_160--Hb_007741_140 Hb_039946_060 Hb_039946_060 Hb_002081_160--Hb_039946_060 Hb_103225_030 Hb_103225_030 Hb_002081_160--Hb_103225_030 Hb_000000_260 Hb_000000_260 Hb_002081_160--Hb_000000_260 Hb_005305_040 Hb_005305_040 Hb_000161_140--Hb_005305_040 Hb_009070_020 Hb_009070_020 Hb_000161_140--Hb_009070_020 Hb_001936_120 Hb_001936_120 Hb_000161_140--Hb_001936_120 Hb_005741_030 Hb_005741_030 Hb_000161_140--Hb_005741_030 Hb_000193_180 Hb_000193_180 Hb_000161_140--Hb_000193_180 Hb_000161_140--Hb_039946_060 Hb_001405_170 Hb_001405_170 Hb_081864_010--Hb_001405_170 Hb_010174_200 Hb_010174_200 Hb_081864_010--Hb_010174_200 Hb_002960_030 Hb_002960_030 Hb_081864_010--Hb_002960_030 Hb_002053_190 Hb_002053_190 Hb_081864_010--Hb_002053_190 Hb_002762_100 Hb_002762_100 Hb_081864_010--Hb_002762_100 Hb_000020_210 Hb_000020_210 Hb_081864_010--Hb_000020_210 Hb_000317_170 Hb_000317_170 Hb_007741_140--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_007741_140--Hb_029791_010 Hb_007741_140--Hb_000000_260 Hb_152914_010 Hb_152914_010 Hb_007741_140--Hb_152914_010 Hb_001680_050 Hb_001680_050 Hb_007741_140--Hb_001680_050 Hb_000983_130 Hb_000983_130 Hb_007741_140--Hb_000983_130 Hb_001427_100 Hb_001427_100 Hb_039946_060--Hb_001427_100 Hb_039946_060--Hb_005741_030 Hb_039946_060--Hb_001405_170 Hb_039946_060--Hb_000020_210 Hb_000012_350 Hb_000012_350 Hb_039946_060--Hb_000012_350 Hb_003054_070 Hb_003054_070 Hb_039946_060--Hb_003054_070 Hb_103225_030--Hb_005741_030 Hb_003023_030 Hb_003023_030 Hb_103225_030--Hb_003023_030 Hb_001408_080 Hb_001408_080 Hb_103225_030--Hb_001408_080 Hb_002534_070 Hb_002534_070 Hb_103225_030--Hb_002534_070 Hb_103225_030--Hb_002762_100 Hb_000849_030 Hb_000849_030 Hb_103225_030--Hb_000849_030 Hb_000000_260--Hb_000317_170 Hb_000000_260--Hb_029791_010 Hb_000000_260--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000000_260--Hb_007579_030 Hb_000000_260--Hb_000983_130 Hb_000000_260--Hb_152914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0663412 11.2441 8.77477 34.5796 0.0060949 0.0298674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.62898 1.35983 0 0.133697 11.7009

CAGE analysis