Hb_004410_110

Information

Type -
Description -
Location Contig4410: 104023-105156
Sequence    

Annotation

kegg
ID rcu:RCOM_1596350
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002510474.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID A7PW81
description Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1
trembl
ID B9R831
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1596350 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42670: 105603-110103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_110 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001247_150 0.1441229023 - - hypothetical protein JCGZ_23179 [Jatropha curcas]
3 Hb_000527_050 0.1514977863 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010690_010 0.1596977638 - - PREDICTED: NADPH-dependent 1-acyldihydroxyacetone phosphate reductase [Jatropha curcas]
5 Hb_002518_220 0.1623342027 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
6 Hb_007259_010 0.1693058146 - - hypothetical protein CISIN_1g0073972mg, partial [Citrus sinensis]
7 Hb_034507_090 0.1763848356 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
8 Hb_002893_030 0.1775228551 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
9 Hb_000599_330 0.1805781645 - - hypothetical protein JCGZ_17661 [Jatropha curcas]
10 Hb_021576_130 0.1809268495 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
11 Hb_002184_080 0.1814871474 - - triacylglycerol lipase, putative [Ricinus communis]
12 Hb_000453_020 0.1817563085 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_007123_010 0.1818845799 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
14 Hb_007221_040 0.1819527856 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
15 Hb_006196_030 0.1820726685 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
16 Hb_004228_070 0.1846409169 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
17 Hb_009113_080 0.1863523247 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
18 Hb_000742_130 0.1868870012 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
19 Hb_001054_040 0.1887867177 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
20 Hb_001882_080 0.1887989625 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103324347 [Prunus mume]

Gene co-expression network

sample Hb_004410_110 Hb_004410_110 Hb_001247_150 Hb_001247_150 Hb_004410_110--Hb_001247_150 Hb_000527_050 Hb_000527_050 Hb_004410_110--Hb_000527_050 Hb_010690_010 Hb_010690_010 Hb_004410_110--Hb_010690_010 Hb_002518_220 Hb_002518_220 Hb_004410_110--Hb_002518_220 Hb_007259_010 Hb_007259_010 Hb_004410_110--Hb_007259_010 Hb_034507_090 Hb_034507_090 Hb_004410_110--Hb_034507_090 Hb_000932_060 Hb_000932_060 Hb_001247_150--Hb_000932_060 Hb_021065_010 Hb_021065_010 Hb_001247_150--Hb_021065_010 Hb_000834_180 Hb_000834_180 Hb_001247_150--Hb_000834_180 Hb_000418_170 Hb_000418_170 Hb_001247_150--Hb_000418_170 Hb_009113_080 Hb_009113_080 Hb_001247_150--Hb_009113_080 Hb_022092_110 Hb_022092_110 Hb_001247_150--Hb_022092_110 Hb_010381_100 Hb_010381_100 Hb_000527_050--Hb_010381_100 Hb_000527_050--Hb_021065_010 Hb_001828_110 Hb_001828_110 Hb_000527_050--Hb_001828_110 Hb_001157_050 Hb_001157_050 Hb_000527_050--Hb_001157_050 Hb_000527_050--Hb_000418_170 Hb_001366_290 Hb_001366_290 Hb_000527_050--Hb_001366_290 Hb_010690_010--Hb_007259_010 Hb_004531_130 Hb_004531_130 Hb_010690_010--Hb_004531_130 Hb_001882_080 Hb_001882_080 Hb_010690_010--Hb_001882_080 Hb_020738_010 Hb_020738_010 Hb_010690_010--Hb_020738_010 Hb_000742_290 Hb_000742_290 Hb_010690_010--Hb_000742_290 Hb_011574_020 Hb_011574_020 Hb_010690_010--Hb_011574_020 Hb_000742_130 Hb_000742_130 Hb_002518_220--Hb_000742_130 Hb_003266_090 Hb_003266_090 Hb_002518_220--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_002518_220--Hb_003581_050 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_006120_210 Hb_006120_210 Hb_002518_220--Hb_006120_210 Hb_012539_100 Hb_012539_100 Hb_002518_220--Hb_012539_100 Hb_007259_010--Hb_001882_080 Hb_007259_010--Hb_011574_020 Hb_007259_010--Hb_004531_130 Hb_001638_340 Hb_001638_340 Hb_007259_010--Hb_001638_340 Hb_007259_010--Hb_000742_290 Hb_000563_630 Hb_000563_630 Hb_034507_090--Hb_000563_630 Hb_001493_140 Hb_001493_140 Hb_034507_090--Hb_001493_140 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_000210_160 Hb_000210_160 Hb_034507_090--Hb_000210_160 Hb_000645_160 Hb_000645_160 Hb_034507_090--Hb_000645_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237181 0.390499 0.576433 0 0.0334156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0633556 0.0547965 0.211392

CAGE analysis