Hb_003906_060

Information

Type -
Description -
Location Contig3906: 39380-42318
Sequence    

Annotation

kegg
ID csv:101215079
description uncharacterized LOC101215079
nr
ID CAN65233.1
description hypothetical protein VITISV_022975 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5B501
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022975 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_060 0.0 - - hypothetical protein VITISV_022975 [Vitis vinifera]
2 Hb_067664_010 0.1727253688 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
3 Hb_000130_200 0.181998187 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
4 Hb_178968_080 0.1843363021 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]
5 Hb_000032_600 0.1843387414 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_000977_150 0.1864369338 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
7 Hb_012404_080 0.1905483542 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
8 Hb_002811_190 0.1940758158 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
9 Hb_006700_040 0.1977446759 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
10 Hb_000329_080 0.2001726789 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
11 Hb_000070_110 0.2002503502 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
12 Hb_000997_290 0.2013545066 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
13 Hb_001040_150 0.2059510119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001054_060 0.2061395253 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
15 Hb_101449_010 0.2061901815 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
16 Hb_003186_040 0.2063225147 - - PREDICTED: protein DENND6A [Jatropha curcas]
17 Hb_001811_080 0.2072864268 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
18 Hb_000656_200 0.209702329 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
19 Hb_001080_030 0.210546587 - - AMP dependent ligase, putative [Ricinus communis]
20 Hb_001793_030 0.2105646851 - - Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Theobroma cacao]

Gene co-expression network

sample Hb_003906_060 Hb_003906_060 Hb_067664_010 Hb_067664_010 Hb_003906_060--Hb_067664_010 Hb_000130_200 Hb_000130_200 Hb_003906_060--Hb_000130_200 Hb_178968_080 Hb_178968_080 Hb_003906_060--Hb_178968_080 Hb_000032_600 Hb_000032_600 Hb_003906_060--Hb_000032_600 Hb_000977_150 Hb_000977_150 Hb_003906_060--Hb_000977_150 Hb_012404_080 Hb_012404_080 Hb_003906_060--Hb_012404_080 Hb_067664_010--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_067664_010--Hb_001054_060 Hb_067664_010--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_000070_110 Hb_000070_110 Hb_000130_200--Hb_000070_110 Hb_000622_060 Hb_000622_060 Hb_000130_200--Hb_000622_060 Hb_000130_200--Hb_178968_080 Hb_000130_200--Hb_000032_600 Hb_033152_110 Hb_033152_110 Hb_000130_200--Hb_033152_110 Hb_002529_090 Hb_002529_090 Hb_000130_200--Hb_002529_090 Hb_178968_080--Hb_000032_600 Hb_178968_080--Hb_000070_110 Hb_001040_150 Hb_001040_150 Hb_178968_080--Hb_001040_150 Hb_178968_080--Hb_000622_060 Hb_178968_080--Hb_001054_060 Hb_000032_600--Hb_001054_060 Hb_000032_600--Hb_000977_150 Hb_000032_600--Hb_001754_120 Hb_000977_150--Hb_001054_060 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_011609_210 Hb_011609_210 Hb_012404_080--Hb_011609_210 Hb_000454_160 Hb_000454_160 Hb_012404_080--Hb_000454_160 Hb_001080_030 Hb_001080_030 Hb_012404_080--Hb_001080_030 Hb_012404_080--Hb_000977_150 Hb_000731_290 Hb_000731_290 Hb_012404_080--Hb_000731_290 Hb_005695_080 Hb_005695_080 Hb_012404_080--Hb_005695_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523019 0.075492 0.0839919 0.101423 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0280629 0.0441577 0.0416223 0.193652 0.370888

CAGE analysis