Hb_003175_060

Information

Type -
Description -
Location Contig3175: 41015-41938
Sequence    

Annotation

kegg
ID rcu:RCOM_0903250
description hypothetical protein
nr
ID XP_012091283.1
description PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21166 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 020_J03.ab1: 41220-41987 , 035_K10.ab1: 41213-41987

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003175_060 0.0 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
2 Hb_000136_020 0.1648349941 - - PREDICTED: F-box/kelch-repeat protein At1g80440-like [Jatropha curcas]
3 Hb_002030_110 0.1659011515 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
4 Hb_004225_140 0.1836036118 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
5 Hb_000077_210 0.1860391492 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
6 Hb_071072_010 0.1869799265 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_001863_340 0.1870017779 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
8 Hb_002997_110 0.1934980458 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
9 Hb_001366_390 0.2071069857 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
10 Hb_110252_010 0.2088278011 - - hypothetical protein JCGZ_16705 [Jatropha curcas]
11 Hb_004218_080 0.2094046732 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
12 Hb_012814_030 0.2109180249 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
13 Hb_000755_040 0.214404248 - - early-responsive to dehydration family protein [Populus trichocarpa]
14 Hb_011918_030 0.2169465868 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
15 Hb_011671_280 0.2178127443 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
16 Hb_003106_240 0.2189708506 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
17 Hb_000069_500 0.2203176233 - - PREDICTED: rhodanese-like domain-containing protein 4, chloroplastic [Jatropha curcas]
18 Hb_000331_530 0.2216752082 - - PREDICTED: callose synthase 10 isoform X1 [Jatropha curcas]
19 Hb_000076_090 0.2232035956 - - protein with unknown function [Ricinus communis]
20 Hb_001250_040 0.2236681269 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]

Gene co-expression network

sample Hb_003175_060 Hb_003175_060 Hb_000136_020 Hb_000136_020 Hb_003175_060--Hb_000136_020 Hb_002030_110 Hb_002030_110 Hb_003175_060--Hb_002030_110 Hb_004225_140 Hb_004225_140 Hb_003175_060--Hb_004225_140 Hb_000077_210 Hb_000077_210 Hb_003175_060--Hb_000077_210 Hb_071072_010 Hb_071072_010 Hb_003175_060--Hb_071072_010 Hb_001863_340 Hb_001863_340 Hb_003175_060--Hb_001863_340 Hb_001250_040 Hb_001250_040 Hb_000136_020--Hb_001250_040 Hb_001571_030 Hb_001571_030 Hb_000136_020--Hb_001571_030 Hb_000076_090 Hb_000076_090 Hb_000136_020--Hb_000076_090 Hb_002301_210 Hb_002301_210 Hb_000136_020--Hb_002301_210 Hb_000136_020--Hb_001863_340 Hb_000928_250 Hb_000928_250 Hb_000136_020--Hb_000928_250 Hb_003090_150 Hb_003090_150 Hb_002030_110--Hb_003090_150 Hb_002030_110--Hb_001863_340 Hb_001894_160 Hb_001894_160 Hb_002030_110--Hb_001894_160 Hb_000622_210 Hb_000622_210 Hb_002030_110--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_002030_110--Hb_033930_010 Hb_000680_180 Hb_000680_180 Hb_002030_110--Hb_000680_180 Hb_004225_140--Hb_000136_020 Hb_004225_140--Hb_001250_040 Hb_001689_050 Hb_001689_050 Hb_004225_140--Hb_001689_050 Hb_173660_010 Hb_173660_010 Hb_004225_140--Hb_173660_010 Hb_004225_140--Hb_001571_030 Hb_000748_110 Hb_000748_110 Hb_000077_210--Hb_000748_110 Hb_011671_280 Hb_011671_280 Hb_000077_210--Hb_011671_280 Hb_000077_210--Hb_001863_340 Hb_001001_090 Hb_001001_090 Hb_000077_210--Hb_001001_090 Hb_000366_050 Hb_000366_050 Hb_000077_210--Hb_000366_050 Hb_001386_020 Hb_001386_020 Hb_000077_210--Hb_001386_020 Hb_071072_010--Hb_000366_050 Hb_005539_100 Hb_005539_100 Hb_071072_010--Hb_005539_100 Hb_032202_050 Hb_032202_050 Hb_071072_010--Hb_032202_050 Hb_011381_070 Hb_011381_070 Hb_071072_010--Hb_011381_070 Hb_002073_020 Hb_002073_020 Hb_071072_010--Hb_002073_020 Hb_071072_010--Hb_000748_110 Hb_000035_490 Hb_000035_490 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001863_340--Hb_001250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02791 32.7233 40.4659 16.3358 4.48756 9.26988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111949 0.0440201 0 0.283818 23.3634

CAGE analysis