Hb_003096_020

Information

Type -
Description -
Location Contig3096: 14523-15622
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003096_020 0.0 - - -
2 Hb_054144_010 0.1559610668 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
3 Hb_002631_220 0.278222202 - - Patellin-4, putative [Ricinus communis]
4 Hb_161023_010 0.2793096727 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
5 Hb_188411_010 0.2944074639 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
6 Hb_007592_020 0.2976621419 - - acyltransferase, putative [Ricinus communis]
7 Hb_160233_020 0.3043183578 - - -
8 Hb_000826_060 0.3081643339 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
9 Hb_002232_280 0.3220521952 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
10 Hb_005548_030 0.3244027139 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
11 Hb_002431_010 0.3290116031 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
12 Hb_001214_170 0.329548951 - - pyruvate kinase family protein [Medicago truncatula]
13 Hb_089140_010 0.3300468925 - - -
14 Hb_014919_020 0.332367887 - - -
15 Hb_000406_010 0.3324238355 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
16 Hb_006286_010 0.3355096895 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
17 Hb_005273_020 0.3376455823 - - -
18 Hb_005504_020 0.339430962 - - -
19 Hb_061466_020 0.3411655111 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_010913_010 0.3417213101 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_003096_020 Hb_003096_020 Hb_054144_010 Hb_054144_010 Hb_003096_020--Hb_054144_010 Hb_002631_220 Hb_002631_220 Hb_003096_020--Hb_002631_220 Hb_161023_010 Hb_161023_010 Hb_003096_020--Hb_161023_010 Hb_188411_010 Hb_188411_010 Hb_003096_020--Hb_188411_010 Hb_007592_020 Hb_007592_020 Hb_003096_020--Hb_007592_020 Hb_160233_020 Hb_160233_020 Hb_003096_020--Hb_160233_020 Hb_002185_010 Hb_002185_010 Hb_054144_010--Hb_002185_010 Hb_000826_060 Hb_000826_060 Hb_054144_010--Hb_000826_060 Hb_054144_010--Hb_002631_220 Hb_005928_050 Hb_005928_050 Hb_054144_010--Hb_005928_050 Hb_005273_020 Hb_005273_020 Hb_054144_010--Hb_005273_020 Hb_001214_150 Hb_001214_150 Hb_002631_220--Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_002631_220--Hb_004945_020 Hb_002447_160 Hb_002447_160 Hb_002631_220--Hb_002447_160 Hb_089140_010 Hb_089140_010 Hb_002631_220--Hb_089140_010 Hb_002631_220--Hb_007592_020 Hb_126648_010 Hb_126648_010 Hb_002631_220--Hb_126648_010 Hb_161023_010--Hb_188411_010 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_014919_020 Hb_014919_020 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_032264_080 Hb_032264_080 Hb_007592_020--Hb_032264_080 Hb_025214_090 Hb_025214_090 Hb_007592_020--Hb_025214_090 Hb_000152_510 Hb_000152_510 Hb_007592_020--Hb_000152_510 Hb_000181_410 Hb_000181_410 Hb_007592_020--Hb_000181_410 Hb_005883_070 Hb_005883_070 Hb_007592_020--Hb_005883_070 Hb_008725_060 Hb_008725_060 Hb_007592_020--Hb_008725_060 Hb_160233_020--Hb_001214_170 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.210799 0.278351 0.238682 0.231435 0.231801 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.180624 0 0 0

CAGE analysis