Hb_002014_110

Information

Type -
Description -
Location Contig2014: 120476-123199
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_110 0.0 - - -
2 Hb_000529_240 0.3170282525 - - -
3 Hb_000275_040 0.3222948222 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_170207_010 0.3235728733 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
5 Hb_000987_090 0.3236238186 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_068804_040 0.3371991789 - - -
7 Hb_005048_060 0.3397964452 - - conserved hypothetical protein [Ricinus communis]
8 Hb_111347_010 0.3445262732 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
9 Hb_079268_010 0.3467307223 - - -
10 Hb_003209_030 0.3480411029 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
11 Hb_003398_030 0.3491117971 - - PREDICTED: uncharacterized protein LOC104583892 [Brachypodium distachyon]
12 Hb_000077_240 0.3500957187 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
13 Hb_000803_040 0.3505825205 - - -
14 Hb_058722_010 0.3512495117 - - -
15 Hb_003446_050 0.3514417873 - - hypothetical protein B456_002G034000, partial [Gossypium raimondii]
16 Hb_005568_080 0.3516350006 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000482_060 0.3522512409 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
18 Hb_132998_020 0.3554405775 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_000749_080 0.3563538887 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
20 Hb_003579_020 0.3563792873 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]

Gene co-expression network

sample Hb_002014_110 Hb_002014_110 Hb_000529_240 Hb_000529_240 Hb_002014_110--Hb_000529_240 Hb_000275_040 Hb_000275_040 Hb_002014_110--Hb_000275_040 Hb_170207_010 Hb_170207_010 Hb_002014_110--Hb_170207_010 Hb_000987_090 Hb_000987_090 Hb_002014_110--Hb_000987_090 Hb_068804_040 Hb_068804_040 Hb_002014_110--Hb_068804_040 Hb_005048_060 Hb_005048_060 Hb_002014_110--Hb_005048_060 Hb_003209_030 Hb_003209_030 Hb_000529_240--Hb_003209_030 Hb_001495_060 Hb_001495_060 Hb_000529_240--Hb_001495_060 Hb_008667_050 Hb_008667_050 Hb_000529_240--Hb_008667_050 Hb_000331_320 Hb_000331_320 Hb_000529_240--Hb_000331_320 Hb_001047_140 Hb_001047_140 Hb_000529_240--Hb_001047_140 Hb_000453_210 Hb_000453_210 Hb_000529_240--Hb_000453_210 Hb_030619_010 Hb_030619_010 Hb_000275_040--Hb_030619_010 Hb_000275_040--Hb_000529_240 Hb_000670_030 Hb_000670_030 Hb_000275_040--Hb_000670_030 Hb_069022_010 Hb_069022_010 Hb_000275_040--Hb_069022_010 Hb_000567_040 Hb_000567_040 Hb_000275_040--Hb_000567_040 Hb_000275_040--Hb_003209_030 Hb_007451_060 Hb_007451_060 Hb_170207_010--Hb_007451_060 Hb_062006_010 Hb_062006_010 Hb_170207_010--Hb_062006_010 Hb_002180_010 Hb_002180_010 Hb_170207_010--Hb_002180_010 Hb_111347_010 Hb_111347_010 Hb_170207_010--Hb_111347_010 Hb_002615_100 Hb_002615_100 Hb_170207_010--Hb_002615_100 Hb_001787_040 Hb_001787_040 Hb_000987_090--Hb_001787_040 Hb_007904_270 Hb_007904_270 Hb_000987_090--Hb_007904_270 Hb_000987_090--Hb_000275_040 Hb_000749_080 Hb_000749_080 Hb_000987_090--Hb_000749_080 Hb_000803_040 Hb_000803_040 Hb_000987_090--Hb_000803_040 Hb_032202_030 Hb_032202_030 Hb_000987_090--Hb_032202_030 Hb_011249_050 Hb_011249_050 Hb_068804_040--Hb_011249_050 Hb_058722_010 Hb_058722_010 Hb_068804_040--Hb_058722_010 Hb_057098_010 Hb_057098_010 Hb_068804_040--Hb_057098_010 Hb_003416_050 Hb_003416_050 Hb_068804_040--Hb_003416_050 Hb_002546_020 Hb_002546_020 Hb_068804_040--Hb_002546_020 Hb_000098_290 Hb_000098_290 Hb_068804_040--Hb_000098_290 Hb_026687_010 Hb_026687_010 Hb_005048_060--Hb_026687_010 Hb_000787_040 Hb_000787_040 Hb_005048_060--Hb_000787_040 Hb_001638_080 Hb_001638_080 Hb_005048_060--Hb_001638_080 Hb_033834_050 Hb_033834_050 Hb_005048_060--Hb_033834_050 Hb_000943_060 Hb_000943_060 Hb_005048_060--Hb_000943_060 Hb_011628_020 Hb_011628_020 Hb_005048_060--Hb_011628_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.345343 1.53874 0 0 1.00285 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.746854 2.97339 0 0.559449 0

CAGE analysis