Hb_001864_020

Information

Type -
Description -
Location Contig1864: 22584-23865
Sequence    

Annotation

kegg
ID pop:POPTR_0011s03360g
description POPTRDRAFT_660506; hypothetical protein
nr
ID XP_012091423.1
description PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FH37
description Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1
trembl
ID A0A067JLE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21291 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18400: 22276-22642 , PASA_asmbl_18401: 22349-22808 , PASA_asmbl_18402: 23712-23896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001864_020 0.0 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
2 Hb_000609_100 0.1802086749 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000107_510 0.1954244877 - - phosphate transporter [Manihot esculenta]
4 Hb_014834_130 0.2012757555 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
5 Hb_000638_160 0.2041334853 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
6 Hb_001109_180 0.2059515524 - - PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
7 Hb_003734_060 0.207505938 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
8 Hb_000331_460 0.2097245872 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
9 Hb_000617_200 0.2106597898 - - f-actin capping protein alpha, putative [Ricinus communis]
10 Hb_000167_050 0.2106860578 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
11 Hb_062522_010 0.2126343719 - - -
12 Hb_002284_310 0.2129613379 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
13 Hb_003050_250 0.2152219943 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
14 Hb_024714_050 0.2210377237 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
15 Hb_010583_020 0.2221972254 - - PREDICTED: uncharacterized protein LOC105646948 [Jatropha curcas]
16 Hb_003052_050 0.2233120933 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
17 Hb_140439_010 0.2259099942 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
18 Hb_006059_020 0.2293190943 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
19 Hb_000390_110 0.229406702 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
20 Hb_000983_040 0.2294261769 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]

Gene co-expression network

sample Hb_001864_020 Hb_001864_020 Hb_000609_100 Hb_000609_100 Hb_001864_020--Hb_000609_100 Hb_000107_510 Hb_000107_510 Hb_001864_020--Hb_000107_510 Hb_014834_130 Hb_014834_130 Hb_001864_020--Hb_014834_130 Hb_000638_160 Hb_000638_160 Hb_001864_020--Hb_000638_160 Hb_001109_180 Hb_001109_180 Hb_001864_020--Hb_001109_180 Hb_003734_060 Hb_003734_060 Hb_001864_020--Hb_003734_060 Hb_000609_100--Hb_001109_180 Hb_004223_190 Hb_004223_190 Hb_000609_100--Hb_004223_190 Hb_000368_090 Hb_000368_090 Hb_000609_100--Hb_000368_090 Hb_114310_110 Hb_114310_110 Hb_000609_100--Hb_114310_110 Hb_000135_030 Hb_000135_030 Hb_000609_100--Hb_000135_030 Hb_000136_140 Hb_000136_140 Hb_000609_100--Hb_000136_140 Hb_062522_010 Hb_062522_010 Hb_000107_510--Hb_062522_010 Hb_000167_050 Hb_000167_050 Hb_000107_510--Hb_000167_050 Hb_031527_110 Hb_031527_110 Hb_000107_510--Hb_031527_110 Hb_000365_370 Hb_000365_370 Hb_000107_510--Hb_000365_370 Hb_001904_050 Hb_001904_050 Hb_000107_510--Hb_001904_050 Hb_002174_040 Hb_002174_040 Hb_000107_510--Hb_002174_040 Hb_014834_130--Hb_000638_160 Hb_001712_020 Hb_001712_020 Hb_014834_130--Hb_001712_020 Hb_005846_030 Hb_005846_030 Hb_014834_130--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_014834_130--Hb_011689_120 Hb_001301_340 Hb_001301_340 Hb_014834_130--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_014834_130--Hb_006846_150 Hb_000638_160--Hb_000167_050 Hb_000638_160--Hb_005846_030 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_001109_180--Hb_114310_110 Hb_001109_180--Hb_000368_090 Hb_001109_180--Hb_000135_030 Hb_001109_180--Hb_004223_190 Hb_003052_050 Hb_003052_050 Hb_001109_180--Hb_003052_050 Hb_002168_060 Hb_002168_060 Hb_003734_060--Hb_002168_060 Hb_004619_080 Hb_004619_080 Hb_003734_060--Hb_004619_080 Hb_028872_080 Hb_028872_080 Hb_003734_060--Hb_028872_080 Hb_002871_190 Hb_002871_190 Hb_003734_060--Hb_002871_190 Hb_002374_570 Hb_002374_570 Hb_003734_060--Hb_002374_570 Hb_000025_210 Hb_000025_210 Hb_003734_060--Hb_000025_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554965 0 1.48767 1.34992 0.855518 0.513256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58802 1.66412 1.90095 0 2.07826

CAGE analysis