Hb_004223_190

Information

Type -
Description -
Location Contig4223: 126151-133242
Sequence    

Annotation

kegg
ID rcu:RCOM_1597360
description Myosin heavy chain, striated muscle, putative
nr
ID XP_012073826.1
description PREDICTED: filament-like plant protein 4 [Jatropha curcas]
swissprot
ID Q0WSY2
description Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=1 SV=1
trembl
ID A0A067KYK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08235 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41766: 126346-133061 , PASA_asmbl_41767: 126346-133415 , PASA_asmbl_41768: 133081-133405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_190 0.0 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
2 Hb_002078_160 0.0997357645 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
3 Hb_000281_110 0.1279238524 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
4 Hb_000135_030 0.1294507397 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
5 Hb_001482_040 0.1308442021 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011486_040 0.1335056702 - - PREDICTED: protein trichome birefringence-like 13 [Jatropha curcas]
7 Hb_001898_210 0.1382408782 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
8 Hb_001348_180 0.1399914795 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
9 Hb_004191_020 0.1411792947 - - PREDICTED: cysteine synthase [Jatropha curcas]
10 Hb_000056_040 0.1414284976 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
11 Hb_007811_030 0.1439098198 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_002374_240 0.1449460714 - - nucellin, putative [Ricinus communis]
13 Hb_000200_030 0.1456249309 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
14 Hb_004884_070 0.1461008274 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
15 Hb_000136_140 0.1465559922 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
16 Hb_004375_130 0.1496886251 - - kinesin heavy chain, putative [Ricinus communis]
17 Hb_000062_540 0.1529061152 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000705_120 0.153649154 - - glycosyltransferase, putative [Ricinus communis]
19 Hb_000096_080 0.1554924354 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
20 Hb_003994_280 0.1558246284 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]

Gene co-expression network

sample Hb_004223_190 Hb_004223_190 Hb_002078_160 Hb_002078_160 Hb_004223_190--Hb_002078_160 Hb_000281_110 Hb_000281_110 Hb_004223_190--Hb_000281_110 Hb_000135_030 Hb_000135_030 Hb_004223_190--Hb_000135_030 Hb_001482_040 Hb_001482_040 Hb_004223_190--Hb_001482_040 Hb_011486_040 Hb_011486_040 Hb_004223_190--Hb_011486_040 Hb_001898_210 Hb_001898_210 Hb_004223_190--Hb_001898_210 Hb_001640_030 Hb_001640_030 Hb_002078_160--Hb_001640_030 Hb_090051_030 Hb_090051_030 Hb_002078_160--Hb_090051_030 Hb_000705_120 Hb_000705_120 Hb_002078_160--Hb_000705_120 Hb_152202_010 Hb_152202_010 Hb_002078_160--Hb_152202_010 Hb_003994_280 Hb_003994_280 Hb_002078_160--Hb_003994_280 Hb_000554_010 Hb_000554_010 Hb_000281_110--Hb_000554_010 Hb_003206_070 Hb_003206_070 Hb_000281_110--Hb_003206_070 Hb_003032_010 Hb_003032_010 Hb_000281_110--Hb_003032_010 Hb_001454_130 Hb_001454_130 Hb_000281_110--Hb_001454_130 Hb_001633_130 Hb_001633_130 Hb_000281_110--Hb_001633_130 Hb_000169_090 Hb_000169_090 Hb_000281_110--Hb_000169_090 Hb_114310_110 Hb_114310_110 Hb_000135_030--Hb_114310_110 Hb_004398_030 Hb_004398_030 Hb_000135_030--Hb_004398_030 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_002304_040 Hb_002304_040 Hb_001482_040--Hb_002304_040 Hb_000295_080 Hb_000295_080 Hb_001482_040--Hb_000295_080 Hb_000352_120 Hb_000352_120 Hb_001482_040--Hb_000352_120 Hb_000370_020 Hb_000370_020 Hb_001482_040--Hb_000370_020 Hb_001482_040--Hb_090051_030 Hb_027380_220 Hb_027380_220 Hb_001482_040--Hb_027380_220 Hb_004531_140 Hb_004531_140 Hb_011486_040--Hb_004531_140 Hb_011486_040--Hb_152202_010 Hb_011486_040--Hb_001898_210 Hb_011486_040--Hb_001640_030 Hb_011486_040--Hb_002496_020 Hb_011486_040--Hb_000370_020 Hb_172632_040 Hb_172632_040 Hb_001898_210--Hb_172632_040 Hb_009328_020 Hb_009328_020 Hb_001898_210--Hb_009328_020 Hb_001898_210--Hb_152202_010 Hb_000479_250 Hb_000479_250 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2572 3.34684 16.7318 29.0372 25.3133 22.7091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1498 9.14196 26.5049 5.51269 27.3201

CAGE analysis