Hb_000609_100

Information

Type -
Description -
Location Contig609: 166000-168518
Sequence    

Annotation

kegg
ID rcu:RCOM_1075480
description Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative
nr
ID XP_002527197.1
description Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O22773
description Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3
trembl
ID B9SMH8
description Thylakoid lumenal 16.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1075480 PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50881: 167721-168106 , PASA_asmbl_50883: 167738-168220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000609_100 0.0 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_001109_180 0.1011124828 - - PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
3 Hb_004223_190 0.1673968662 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
4 Hb_000368_090 0.1723010043 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
5 Hb_114310_110 0.1749284559 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
6 Hb_000135_030 0.1756260817 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
7 Hb_000136_140 0.179045453 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
8 Hb_000333_080 0.1791533358 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
9 Hb_002174_040 0.1792858413 - - DNAJ heat shock family protein [Theobroma cacao]
10 Hb_000984_270 0.1800577749 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001864_020 0.1802086749 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
12 Hb_005672_020 0.1818985586 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
13 Hb_001584_200 0.1837612463 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
14 Hb_000371_100 0.1839838846 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
15 Hb_000540_050 0.1876382664 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
16 Hb_000300_200 0.1883554321 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
17 Hb_005539_010 0.1936621804 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
18 Hb_003935_060 0.1941255306 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
19 Hb_000365_100 0.1952571776 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
20 Hb_012305_100 0.1965968563 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000609_100 Hb_000609_100 Hb_001109_180 Hb_001109_180 Hb_000609_100--Hb_001109_180 Hb_004223_190 Hb_004223_190 Hb_000609_100--Hb_004223_190 Hb_000368_090 Hb_000368_090 Hb_000609_100--Hb_000368_090 Hb_114310_110 Hb_114310_110 Hb_000609_100--Hb_114310_110 Hb_000135_030 Hb_000135_030 Hb_000609_100--Hb_000135_030 Hb_000136_140 Hb_000136_140 Hb_000609_100--Hb_000136_140 Hb_001109_180--Hb_114310_110 Hb_001109_180--Hb_000368_090 Hb_001109_180--Hb_000135_030 Hb_001109_180--Hb_004223_190 Hb_003052_050 Hb_003052_050 Hb_001109_180--Hb_003052_050 Hb_002078_160 Hb_002078_160 Hb_004223_190--Hb_002078_160 Hb_000281_110 Hb_000281_110 Hb_004223_190--Hb_000281_110 Hb_004223_190--Hb_000135_030 Hb_001482_040 Hb_001482_040 Hb_004223_190--Hb_001482_040 Hb_011486_040 Hb_011486_040 Hb_004223_190--Hb_011486_040 Hb_001898_210 Hb_001898_210 Hb_004223_190--Hb_001898_210 Hb_174865_040 Hb_174865_040 Hb_000368_090--Hb_174865_040 Hb_012573_050 Hb_012573_050 Hb_000368_090--Hb_012573_050 Hb_001277_100 Hb_001277_100 Hb_000368_090--Hb_001277_100 Hb_000327_110 Hb_000327_110 Hb_000368_090--Hb_000327_110 Hb_000941_100 Hb_000941_100 Hb_000368_090--Hb_000941_100 Hb_156850_100 Hb_156850_100 Hb_000368_090--Hb_156850_100 Hb_114310_110--Hb_000135_030 Hb_000608_170 Hb_000608_170 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_000135_030--Hb_004398_030 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_000365_100 Hb_000365_100 Hb_000136_140--Hb_000365_100 Hb_001512_040 Hb_001512_040 Hb_000136_140--Hb_001512_040 Hb_000244_180 Hb_000244_180 Hb_000136_140--Hb_000244_180 Hb_000136_140--Hb_012573_050 Hb_000836_290 Hb_000836_290 Hb_000136_140--Hb_000836_290 Hb_006810_030 Hb_006810_030 Hb_000136_140--Hb_006810_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94565 0.342843 6.78921 6.24482 5.85619 2.65894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04321 2.82637 5.16301 0.386064 10.0816

CAGE analysis