Hb_001109_180

Information

Type -
Description -
Location Contig1109: 349138-351109
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01410g
description hypothetical protein
nr
ID XP_011018418.1
description PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID U5GMT7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s01410g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03369: 346758-350396 , PASA_asmbl_03370: 350413-351077
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_180 0.0 - - PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
2 Hb_000609_100 0.1011124828 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_114310_110 0.1881089677 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_000368_090 0.1903823143 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
5 Hb_000135_030 0.194835326 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
6 Hb_004223_190 0.2002423649 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
7 Hb_003052_050 0.2058483757 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
8 Hb_001864_020 0.2059515524 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
9 Hb_005539_010 0.2078387511 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
10 Hb_029610_010 0.2080289605 - - caffeic acid 3-O-methyltransferase [Hevea brasiliensis]
11 Hb_001584_200 0.2082645348 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
12 Hb_007975_060 0.2101293129 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
13 Hb_001277_100 0.2104682867 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
14 Hb_000928_010 0.2116428489 - - Cell division protein ftsZ, putative [Ricinus communis]
15 Hb_000540_050 0.2117390889 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
16 Hb_004223_050 0.2119900067 - - hexokinase [Manihot esculenta]
17 Hb_000261_050 0.2120489533 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
18 Hb_001811_160 0.2132364027 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
19 Hb_002174_040 0.2135424881 - - DNAJ heat shock family protein [Theobroma cacao]
20 Hb_000365_130 0.2144113372 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]

Gene co-expression network

sample Hb_001109_180 Hb_001109_180 Hb_000609_100 Hb_000609_100 Hb_001109_180--Hb_000609_100 Hb_114310_110 Hb_114310_110 Hb_001109_180--Hb_114310_110 Hb_000368_090 Hb_000368_090 Hb_001109_180--Hb_000368_090 Hb_000135_030 Hb_000135_030 Hb_001109_180--Hb_000135_030 Hb_004223_190 Hb_004223_190 Hb_001109_180--Hb_004223_190 Hb_003052_050 Hb_003052_050 Hb_001109_180--Hb_003052_050 Hb_000609_100--Hb_004223_190 Hb_000609_100--Hb_000368_090 Hb_000609_100--Hb_114310_110 Hb_000609_100--Hb_000135_030 Hb_000136_140 Hb_000136_140 Hb_000609_100--Hb_000136_140 Hb_114310_110--Hb_000135_030 Hb_000608_170 Hb_000608_170 Hb_114310_110--Hb_000608_170 Hb_004398_030 Hb_004398_030 Hb_114310_110--Hb_004398_030 Hb_000928_010 Hb_000928_010 Hb_114310_110--Hb_000928_010 Hb_000371_100 Hb_000371_100 Hb_114310_110--Hb_000371_100 Hb_185447_010 Hb_185447_010 Hb_114310_110--Hb_185447_010 Hb_174865_040 Hb_174865_040 Hb_000368_090--Hb_174865_040 Hb_012573_050 Hb_012573_050 Hb_000368_090--Hb_012573_050 Hb_001277_100 Hb_001277_100 Hb_000368_090--Hb_001277_100 Hb_000327_110 Hb_000327_110 Hb_000368_090--Hb_000327_110 Hb_000941_100 Hb_000941_100 Hb_000368_090--Hb_000941_100 Hb_156850_100 Hb_156850_100 Hb_000368_090--Hb_156850_100 Hb_000135_030--Hb_004398_030 Hb_011486_040 Hb_011486_040 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_002496_020 Hb_002496_020 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270 Hb_002078_160 Hb_002078_160 Hb_004223_190--Hb_002078_160 Hb_000281_110 Hb_000281_110 Hb_004223_190--Hb_000281_110 Hb_004223_190--Hb_000135_030 Hb_001482_040 Hb_001482_040 Hb_004223_190--Hb_001482_040 Hb_004223_190--Hb_011486_040 Hb_001898_210 Hb_001898_210 Hb_004223_190--Hb_001898_210 Hb_010931_130 Hb_010931_130 Hb_003052_050--Hb_010931_130 Hb_001514_120 Hb_001514_120 Hb_003052_050--Hb_001514_120 Hb_005167_010 Hb_005167_010 Hb_003052_050--Hb_005167_010 Hb_012799_170 Hb_012799_170 Hb_003052_050--Hb_012799_170 Hb_001541_120 Hb_001541_120 Hb_003052_050--Hb_001541_120 Hb_007975_060 Hb_007975_060 Hb_003052_050--Hb_007975_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.632029 0.232926 1.4098 1.17131 1.44299 0.237927
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17043 0.552421 1.31527 0.0737207 1.90886

CAGE analysis