Hb_001776_230

Information

Type -
Description -
Location Contig1776: 174061-175518
Sequence    

Annotation

kegg
ID bvg:104884260
description uncharacterized LOC104884260
nr
ID XP_010667186.1
description PREDICTED: uncharacterized protein LOC104884260 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID Q2AA09
description Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_230 0.0 - - PREDICTED: uncharacterized protein LOC104884260 [Beta vulgaris subsp. vulgaris]
2 Hb_000092_160 0.2586166639 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
3 Hb_011609_160 0.3480458168 - - Lipase, putative [Ricinus communis]
4 Hb_002719_070 0.3550301526 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_000307_120 0.3607788114 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
6 Hb_005045_050 0.3635591613 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 3 [Jatropha curcas]
7 Hb_020259_020 0.3681469866 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
8 Hb_000032_190 0.3887295953 - - -
9 Hb_001112_020 0.3924029866 - - PREDICTED: uncharacterized protein LOC103717724, partial [Phoenix dactylifera]
10 Hb_001405_240 0.3940417512 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001999_240 0.3977044076 - - PREDICTED: josephin-like protein [Populus euphratica]
12 Hb_000445_010 0.3985491683 - - PREDICTED: uncharacterized protein LOC105113411 [Populus euphratica]
13 Hb_001563_020 0.4023643238 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
14 Hb_002157_090 0.4043774768 - - hypothetical protein VITISV_041741 [Vitis vinifera]
15 Hb_006775_050 0.4066877301 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
16 Hb_007889_020 0.4074353001 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019863_020 0.4093585642 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
18 Hb_004102_120 0.4145515126 - - -
19 Hb_062827_010 0.4156130772 - - -
20 Hb_009486_110 0.4161135811 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]

Gene co-expression network

sample Hb_001776_230 Hb_001776_230 Hb_000092_160 Hb_000092_160 Hb_001776_230--Hb_000092_160 Hb_011609_160 Hb_011609_160 Hb_001776_230--Hb_011609_160 Hb_002719_070 Hb_002719_070 Hb_001776_230--Hb_002719_070 Hb_000307_120 Hb_000307_120 Hb_001776_230--Hb_000307_120 Hb_005045_050 Hb_005045_050 Hb_001776_230--Hb_005045_050 Hb_020259_020 Hb_020259_020 Hb_001776_230--Hb_020259_020 Hb_000032_190 Hb_000032_190 Hb_000092_160--Hb_000032_190 Hb_000313_020 Hb_000313_020 Hb_000092_160--Hb_000313_020 Hb_001205_010 Hb_001205_010 Hb_000092_160--Hb_001205_010 Hb_008725_160 Hb_008725_160 Hb_000092_160--Hb_008725_160 Hb_002539_030 Hb_002539_030 Hb_000092_160--Hb_002539_030 Hb_011609_160--Hb_002719_070 Hb_135978_010 Hb_135978_010 Hb_011609_160--Hb_135978_010 Hb_001623_030 Hb_001623_030 Hb_011609_160--Hb_001623_030 Hb_003142_100 Hb_003142_100 Hb_011609_160--Hb_003142_100 Hb_000656_180 Hb_000656_180 Hb_011609_160--Hb_000656_180 Hb_003861_130 Hb_003861_130 Hb_011609_160--Hb_003861_130 Hb_001189_060 Hb_001189_060 Hb_002719_070--Hb_001189_060 Hb_010490_030 Hb_010490_030 Hb_002719_070--Hb_010490_030 Hb_031004_010 Hb_031004_010 Hb_002719_070--Hb_031004_010 Hb_002719_070--Hb_135978_010 Hb_004488_010 Hb_004488_010 Hb_002719_070--Hb_004488_010 Hb_062785_010 Hb_062785_010 Hb_000307_120--Hb_062785_010 Hb_005363_010 Hb_005363_010 Hb_000307_120--Hb_005363_010 Hb_124996_010 Hb_124996_010 Hb_000307_120--Hb_124996_010 Hb_002094_070 Hb_002094_070 Hb_000307_120--Hb_002094_070 Hb_118094_010 Hb_118094_010 Hb_000307_120--Hb_118094_010 Hb_000162_220 Hb_000162_220 Hb_000307_120--Hb_000162_220 Hb_005045_050--Hb_118094_010 Hb_005045_050--Hb_005363_010 Hb_002157_090 Hb_002157_090 Hb_005045_050--Hb_002157_090 Hb_001563_020 Hb_001563_020 Hb_005045_050--Hb_001563_020 Hb_029243_010 Hb_029243_010 Hb_005045_050--Hb_029243_010 Hb_133661_010 Hb_133661_010 Hb_005045_050--Hb_133661_010 Hb_000170_170 Hb_000170_170 Hb_020259_020--Hb_000170_170 Hb_005870_010 Hb_005870_010 Hb_020259_020--Hb_005870_010 Hb_002309_030 Hb_002309_030 Hb_020259_020--Hb_002309_030 Hb_010866_020 Hb_010866_020 Hb_020259_020--Hb_010866_020 Hb_004308_010 Hb_004308_010 Hb_020259_020--Hb_004308_010 Hb_000181_370 Hb_000181_370 Hb_020259_020--Hb_000181_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0355934 0 0.0365443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0489096 0 0 0 0

CAGE analysis