Hb_001671_050

Information

Type -
Description -
Location Contig1671: 51853-52230
Sequence    

Annotation

kegg
ID rcu:RCOM_0715990
description ccd1, putative
nr
ID XP_002523300.1
description ccd1, putative [Ricinus communis]
swissprot
ID Q9ZPX9
description Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2
trembl
ID B9SBD1
description Ccd1, putative OS=Ricinus communis GN=RCOM_0715990 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein kic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001671_050 0.0 - - ccd1, putative [Ricinus communis]
2 Hb_000923_060 0.1824166327 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
3 Hb_046823_010 0.1998688504 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
4 Hb_000368_030 0.2047216497 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
5 Hb_000049_110 0.2124599747 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
6 Hb_000009_520 0.2157213357 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
7 Hb_000220_030 0.2171534077 - - PREDICTED: amino-acid permease BAT1 homolog isoform X2 [Jatropha curcas]
8 Hb_000594_070 0.2222476624 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_006889_020 0.2302588199 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_012804_020 0.2341425303 - - PREDICTED: abscisic acid 8'-hydroxylase 4-like [Jatropha curcas]
11 Hb_013607_050 0.2349670711 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 2 [Jatropha curcas]
12 Hb_006445_020 0.2380040651 - - hypothetical protein L484_026741 [Morus notabilis]
13 Hb_000270_180 0.2392241452 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
14 Hb_000189_170 0.2413421103 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_000331_420 0.2443656713 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
16 Hb_000648_050 0.2452509624 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
17 Hb_000796_010 0.2454433155 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
18 Hb_000046_310 0.2454782071 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
19 Hb_002686_160 0.2458537495 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
20 Hb_005214_170 0.2460085073 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]

Gene co-expression network

sample Hb_001671_050 Hb_001671_050 Hb_000923_060 Hb_000923_060 Hb_001671_050--Hb_000923_060 Hb_046823_010 Hb_046823_010 Hb_001671_050--Hb_046823_010 Hb_000368_030 Hb_000368_030 Hb_001671_050--Hb_000368_030 Hb_000049_110 Hb_000049_110 Hb_001671_050--Hb_000049_110 Hb_000009_520 Hb_000009_520 Hb_001671_050--Hb_000009_520 Hb_000220_030 Hb_000220_030 Hb_001671_050--Hb_000220_030 Hb_001019_100 Hb_001019_100 Hb_000923_060--Hb_001019_100 Hb_001486_250 Hb_001486_250 Hb_000923_060--Hb_001486_250 Hb_000193_260 Hb_000193_260 Hb_000923_060--Hb_000193_260 Hb_000076_210 Hb_000076_210 Hb_000923_060--Hb_000076_210 Hb_001804_090 Hb_001804_090 Hb_000923_060--Hb_001804_090 Hb_006445_020 Hb_006445_020 Hb_000923_060--Hb_006445_020 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_046823_010--Hb_000049_110 Hb_000525_050 Hb_000525_050 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_003040_030 Hb_003040_030 Hb_046823_010--Hb_003040_030 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340 Hb_000270_180 Hb_000270_180 Hb_000368_030--Hb_000270_180 Hb_005181_160 Hb_005181_160 Hb_000368_030--Hb_005181_160 Hb_001221_330 Hb_001221_330 Hb_000368_030--Hb_001221_330 Hb_001946_220 Hb_001946_220 Hb_000368_030--Hb_001946_220 Hb_007919_020 Hb_007919_020 Hb_000368_030--Hb_007919_020 Hb_002249_070 Hb_002249_070 Hb_000368_030--Hb_002249_070 Hb_001488_030 Hb_001488_030 Hb_000049_110--Hb_001488_030 Hb_003411_090 Hb_003411_090 Hb_000049_110--Hb_003411_090 Hb_000049_110--Hb_000525_050 Hb_000796_010 Hb_000796_010 Hb_000049_110--Hb_000796_010 Hb_001250_070 Hb_001250_070 Hb_000049_110--Hb_001250_070 Hb_000009_520--Hb_000193_260 Hb_002686_150 Hb_002686_150 Hb_000009_520--Hb_002686_150 Hb_026198_010 Hb_026198_010 Hb_000009_520--Hb_026198_010 Hb_005946_150 Hb_005946_150 Hb_000009_520--Hb_005946_150 Hb_002235_390 Hb_002235_390 Hb_000009_520--Hb_002235_390 Hb_002203_030 Hb_002203_030 Hb_000009_520--Hb_002203_030 Hb_000220_030--Hb_000270_180 Hb_000220_030--Hb_000009_520 Hb_000220_030--Hb_000193_260 Hb_000648_050 Hb_000648_050 Hb_000220_030--Hb_000648_050 Hb_000017_260 Hb_000017_260 Hb_000220_030--Hb_000017_260 Hb_002534_130 Hb_002534_130 Hb_000220_030--Hb_002534_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.591485 2.31436 6.16749 2.01976 0.271898 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45424 0.874788 1.92398 2.20093 1.5067

CAGE analysis