Hb_001517_040

Information

Type -
Description -
Location Contig1517: 22754-23705
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001517_040 0.0 - - -
2 Hb_000665_110 0.2599649925 - - Ribosomal protein S11-beta [Theobroma cacao]
3 Hb_002025_210 0.2866057238 - - -
4 Hb_000157_080 0.2869002864 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
5 Hb_001635_130 0.2915425856 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
6 Hb_009393_190 0.2955194332 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
7 Hb_001233_020 0.299795716 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
8 Hb_005489_010 0.3047864462 - - hypothetical protein POPTR_0011s11420g [Populus trichocarpa]
9 Hb_000562_060 0.3055885008 - - PREDICTED: uncharacterized protein LOC105169741 [Sesamum indicum]
10 Hb_100743_010 0.3078686146 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
11 Hb_000442_110 0.3096554389 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
12 Hb_002073_010 0.3110867046 - - -
13 Hb_005054_040 0.3183057751 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
14 Hb_003602_010 0.318315311 - - serine hydroxymethyltransferase, partial [Populus alba]
15 Hb_150766_020 0.3187192553 - - hypothetical protein VITISV_030841 [Vitis vinifera]
16 Hb_014834_040 0.318845214 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
17 Hb_001220_010 0.3245384417 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
18 Hb_000240_120 0.3250275548 - - ras-related protein Rab-5B [Reticulomyxa filosa]
19 Hb_001269_250 0.3265007571 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
20 Hb_001208_040 0.3266352592 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]

Gene co-expression network

sample Hb_001517_040 Hb_001517_040 Hb_000665_110 Hb_000665_110 Hb_001517_040--Hb_000665_110 Hb_002025_210 Hb_002025_210 Hb_001517_040--Hb_002025_210 Hb_000157_080 Hb_000157_080 Hb_001517_040--Hb_000157_080 Hb_001635_130 Hb_001635_130 Hb_001517_040--Hb_001635_130 Hb_009393_190 Hb_009393_190 Hb_001517_040--Hb_009393_190 Hb_001233_020 Hb_001233_020 Hb_001517_040--Hb_001233_020 Hb_000562_060 Hb_000562_060 Hb_000665_110--Hb_000562_060 Hb_000665_110--Hb_002025_210 Hb_000181_380 Hb_000181_380 Hb_000665_110--Hb_000181_380 Hb_000665_110--Hb_001233_020 Hb_001220_010 Hb_001220_010 Hb_000665_110--Hb_001220_010 Hb_005489_010 Hb_005489_010 Hb_000665_110--Hb_005489_010 Hb_002025_210--Hb_005489_010 Hb_002344_120 Hb_002344_120 Hb_002025_210--Hb_002344_120 Hb_000994_110 Hb_000994_110 Hb_002025_210--Hb_000994_110 Hb_013492_010 Hb_013492_010 Hb_002025_210--Hb_013492_010 Hb_150766_020 Hb_150766_020 Hb_002025_210--Hb_150766_020 Hb_000157_080--Hb_150766_020 Hb_000157_080--Hb_009393_190 Hb_000157_080--Hb_000994_110 Hb_179812_010 Hb_179812_010 Hb_000157_080--Hb_179812_010 Hb_000243_040 Hb_000243_040 Hb_000157_080--Hb_000243_040 Hb_000136_180 Hb_000136_180 Hb_000157_080--Hb_000136_180 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_002900_130 Hb_002900_130 Hb_001635_130--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260 Hb_009615_020 Hb_009615_020 Hb_009393_190--Hb_009615_020 Hb_000574_280 Hb_000574_280 Hb_009393_190--Hb_000574_280 Hb_100743_010 Hb_100743_010 Hb_009393_190--Hb_100743_010 Hb_001437_090 Hb_001437_090 Hb_009393_190--Hb_001437_090 Hb_000959_310 Hb_000959_310 Hb_009393_190--Hb_000959_310 Hb_001233_020--Hb_001220_010 Hb_132180_010 Hb_132180_010 Hb_001233_020--Hb_132180_010 Hb_004669_030 Hb_004669_030 Hb_001233_020--Hb_004669_030 Hb_000671_120 Hb_000671_120 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_001233_020--Hb_000994_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.500558 2.40397 0 0.898544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 2.73637 0 0.643687 0

CAGE analysis