Hb_001195_750

Information

Type -
Description -
Location Contig1195: 531797-534935
Sequence    

Annotation

kegg
ID rcu:RCOM_1593370
description multidrug resistance pump, putative
nr
ID XP_012071762.1
description PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A067KQN7
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_04377 PE=3 SV=1
Gene Ontology
ID GO:0005774
description protein transparent testa 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_750 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
2 Hb_064122_010 0.1974502844 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
3 Hb_001148_050 0.2164570747 - - -
4 Hb_001369_140 0.2204899145 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008727_030 0.2323219923 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011139_010 0.2327371043 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_003789_020 0.2387791397 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
8 Hb_000380_210 0.2391662203 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
9 Hb_001360_060 0.2392593478 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
10 Hb_003177_080 0.2409599893 - - hypothetical protein L484_016032 [Morus notabilis]
11 Hb_000836_480 0.2421145413 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_001863_280 0.2461889168 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
13 Hb_000163_010 0.246405898 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
14 Hb_004462_040 0.2464441389 - - unnamed protein product [Vitis vinifera]
15 Hb_002186_070 0.2466340098 - - kinase, putative [Ricinus communis]
16 Hb_135811_040 0.2469353455 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003097_200 0.2477850582 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005144_180 0.2490020993 - - PREDICTED: protein enabled homolog [Populus euphratica]
19 Hb_003435_070 0.2490043892 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
20 Hb_000797_030 0.253240295 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_001195_750 Hb_001195_750 Hb_064122_010 Hb_064122_010 Hb_001195_750--Hb_064122_010 Hb_001148_050 Hb_001148_050 Hb_001195_750--Hb_001148_050 Hb_001369_140 Hb_001369_140 Hb_001195_750--Hb_001369_140 Hb_008727_030 Hb_008727_030 Hb_001195_750--Hb_008727_030 Hb_011139_010 Hb_011139_010 Hb_001195_750--Hb_011139_010 Hb_003789_020 Hb_003789_020 Hb_001195_750--Hb_003789_020 Hb_064122_010--Hb_001369_140 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_009732_040 Hb_009732_040 Hb_064122_010--Hb_009732_040 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_011452_020 Hb_011452_020 Hb_001148_050--Hb_011452_020 Hb_000077_450 Hb_000077_450 Hb_001148_050--Hb_000077_450 Hb_001148_050--Hb_011139_010 Hb_003435_070 Hb_003435_070 Hb_001148_050--Hb_003435_070 Hb_001148_050--Hb_008727_030 Hb_002900_040 Hb_002900_040 Hb_001148_050--Hb_002900_040 Hb_000380_210 Hb_000380_210 Hb_001369_140--Hb_000380_210 Hb_000080_080 Hb_000080_080 Hb_001369_140--Hb_000080_080 Hb_032225_030 Hb_032225_030 Hb_001369_140--Hb_032225_030 Hb_009780_110 Hb_009780_110 Hb_001369_140--Hb_009780_110 Hb_002597_010 Hb_002597_010 Hb_001369_140--Hb_002597_010 Hb_000967_010 Hb_000967_010 Hb_008727_030--Hb_000967_010 Hb_118707_020 Hb_118707_020 Hb_008727_030--Hb_118707_020 Hb_008727_030--Hb_003435_070 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_008727_030--Hb_011139_010 Hb_011139_010--Hb_003789_020 Hb_182831_020 Hb_182831_020 Hb_011139_010--Hb_182831_020 Hb_030394_050 Hb_030394_050 Hb_011139_010--Hb_030394_050 Hb_011139_010--Hb_000676_380 Hb_161346_010 Hb_161346_010 Hb_011139_010--Hb_161346_010 Hb_003789_020--Hb_030394_050 Hb_003789_020--Hb_182831_020 Hb_001360_060 Hb_001360_060 Hb_003789_020--Hb_001360_060 Hb_003789_020--Hb_005144_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00874526 0.01615 0.199285 0.0212115 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0378888 0 0.309191 0.0399655

CAGE analysis