Hb_000996_130

Information

Type -
Description -
Location Contig996: 132335-134423
Sequence    

Annotation

kegg
ID pop:POPTR_0003s12450g
description POPTRDRAFT_554336; hypothetical protein
nr
ID XP_011022731.1
description PREDICTED: remorin-like [Populus euphratica]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9GWG0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_130 0.0 - - PREDICTED: remorin-like [Populus euphratica]
2 Hb_073973_020 0.170275748 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
3 Hb_001307_200 0.170982498 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
4 Hb_082683_010 0.1737084424 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
5 Hb_000527_070 0.1765924681 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
6 Hb_114684_010 0.1787725314 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
7 Hb_000527_140 0.1814925676 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
8 Hb_004096_220 0.1817618915 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
9 Hb_001268_300 0.1821782835 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000417_410 0.1821928822 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
11 Hb_005880_010 0.1827022114 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_000261_320 0.1835107798 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_043768_010 0.1892906766 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
14 Hb_001404_090 0.1909948151 - - PREDICTED: kinesin-like protein NACK2 [Camelina sativa]
15 Hb_002217_070 0.1915509125 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
16 Hb_002217_200 0.192951902 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
17 Hb_000221_180 0.1935926039 - - VQ motif-containing family protein [Populus trichocarpa]
18 Hb_000227_330 0.19415222 - - Acyl-CoA synthetase [Ricinus communis]
19 Hb_003517_100 0.1952335865 transcription factor TF Family: GRAS -
20 Hb_000345_340 0.1956065023 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_000996_130 Hb_000996_130 Hb_073973_020 Hb_073973_020 Hb_000996_130--Hb_073973_020 Hb_001307_200 Hb_001307_200 Hb_000996_130--Hb_001307_200 Hb_082683_010 Hb_082683_010 Hb_000996_130--Hb_082683_010 Hb_000527_070 Hb_000527_070 Hb_000996_130--Hb_000527_070 Hb_114684_010 Hb_114684_010 Hb_000996_130--Hb_114684_010 Hb_000527_140 Hb_000527_140 Hb_000996_130--Hb_000527_140 Hb_073973_020--Hb_001307_200 Hb_000221_180 Hb_000221_180 Hb_073973_020--Hb_000221_180 Hb_000417_410 Hb_000417_410 Hb_073973_020--Hb_000417_410 Hb_001268_300 Hb_001268_300 Hb_073973_020--Hb_001268_300 Hb_002888_040 Hb_002888_040 Hb_073973_020--Hb_002888_040 Hb_001496_120 Hb_001496_120 Hb_073973_020--Hb_001496_120 Hb_004096_220 Hb_004096_220 Hb_001307_200--Hb_004096_220 Hb_001307_200--Hb_001268_300 Hb_001307_200--Hb_002888_040 Hb_001307_200--Hb_000221_180 Hb_001307_200--Hb_000417_410 Hb_002420_010 Hb_002420_010 Hb_082683_010--Hb_002420_010 Hb_082683_010--Hb_001268_300 Hb_000816_020 Hb_000816_020 Hb_082683_010--Hb_000816_020 Hb_082683_010--Hb_000527_140 Hb_002003_040 Hb_002003_040 Hb_082683_010--Hb_002003_040 Hb_001677_230 Hb_001677_230 Hb_082683_010--Hb_001677_230 Hb_000141_010 Hb_000141_010 Hb_000527_070--Hb_000141_010 Hb_000527_070--Hb_000527_140 Hb_000527_070--Hb_114684_010 Hb_000847_020 Hb_000847_020 Hb_000527_070--Hb_000847_020 Hb_000345_340 Hb_000345_340 Hb_000527_070--Hb_000345_340 Hb_000527_070--Hb_073973_020 Hb_114684_010--Hb_000527_140 Hb_029622_020 Hb_029622_020 Hb_114684_010--Hb_029622_020 Hb_004032_090 Hb_004032_090 Hb_114684_010--Hb_004032_090 Hb_004007_120 Hb_004007_120 Hb_114684_010--Hb_004007_120 Hb_042202_020 Hb_042202_020 Hb_114684_010--Hb_042202_020 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000527_140--Hb_000847_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0759778 2.36577 0.86017 0.752846 0.152799 0.259871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439473 0.345451 0 2.56509 1.89847

CAGE analysis