Hb_000946_170

Information

Type -
Description -
Location Contig946: 200302-201860
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13450g
description POPTRDRAFT_858831; hypothetical protein
nr
ID XP_012083031.1
description PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
swissprot
ID Q9LXG9
description Plant cysteine oxidase 1 OS=Arabidopsis thaliana GN=PCO1 PE=1 SV=1
trembl
ID A0A067LE05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09732 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000946_170 0.0 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
2 Hb_000342_080 0.1948793711 - - hypothetical protein L484_019524 [Morus notabilis]
3 Hb_007416_370 0.1976782266 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001546_050 0.2052322252 - - -
5 Hb_002685_120 0.2133396945 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005527_030 0.2193835401 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
7 Hb_009851_110 0.219960599 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_011639_080 0.2241258742 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
9 Hb_003041_060 0.2262416569 - - -
10 Hb_000540_150 0.2298418766 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
11 Hb_067776_020 0.2299053932 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
12 Hb_000243_090 0.2312655642 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
13 Hb_000057_050 0.2340237905 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
14 Hb_000134_310 0.2345782704 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
15 Hb_000159_110 0.2395445916 - - PREDICTED: thioredoxin-like protein YLS8 isoform X2 [Malus domestica]
16 Hb_007380_080 0.2409645205 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_002687_190 0.2413098444 - - prolyl oligopeptidase [Cicer arietinum]
18 Hb_009543_020 0.2421514466 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
19 Hb_000140_490 0.242402719 - - BnaC01g32630D [Brassica napus]
20 Hb_000866_470 0.2447299139 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]

Gene co-expression network

sample Hb_000946_170 Hb_000946_170 Hb_000342_080 Hb_000342_080 Hb_000946_170--Hb_000342_080 Hb_007416_370 Hb_007416_370 Hb_000946_170--Hb_007416_370 Hb_001546_050 Hb_001546_050 Hb_000946_170--Hb_001546_050 Hb_002685_120 Hb_002685_120 Hb_000946_170--Hb_002685_120 Hb_005527_030 Hb_005527_030 Hb_000946_170--Hb_005527_030 Hb_009851_110 Hb_009851_110 Hb_000946_170--Hb_009851_110 Hb_009543_020 Hb_009543_020 Hb_000342_080--Hb_009543_020 Hb_002903_080 Hb_002903_080 Hb_000342_080--Hb_002903_080 Hb_000342_080--Hb_001546_050 Hb_007380_090 Hb_007380_090 Hb_000342_080--Hb_007380_090 Hb_000364_060 Hb_000364_060 Hb_000342_080--Hb_000364_060 Hb_000071_180 Hb_000071_180 Hb_000342_080--Hb_000071_180 Hb_002518_300 Hb_002518_300 Hb_007416_370--Hb_002518_300 Hb_007416_370--Hb_005527_030 Hb_003243_020 Hb_003243_020 Hb_007416_370--Hb_003243_020 Hb_008595_010 Hb_008595_010 Hb_007416_370--Hb_008595_010 Hb_007416_370--Hb_000342_080 Hb_007416_370--Hb_009851_110 Hb_000159_110 Hb_000159_110 Hb_001546_050--Hb_000159_110 Hb_001546_050--Hb_009543_020 Hb_000051_170 Hb_000051_170 Hb_001546_050--Hb_000051_170 Hb_003405_050 Hb_003405_050 Hb_001546_050--Hb_003405_050 Hb_003711_040 Hb_003711_040 Hb_001546_050--Hb_003711_040 Hb_001266_140 Hb_001266_140 Hb_002685_120--Hb_001266_140 Hb_000567_360 Hb_000567_360 Hb_002685_120--Hb_000567_360 Hb_118977_010 Hb_118977_010 Hb_002685_120--Hb_118977_010 Hb_000198_070 Hb_000198_070 Hb_002685_120--Hb_000198_070 Hb_007777_020 Hb_007777_020 Hb_002685_120--Hb_007777_020 Hb_000140_490 Hb_000140_490 Hb_002685_120--Hb_000140_490 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_000170_190 Hb_000170_190 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_000037_110 Hb_000037_110 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_004899_030 Hb_004899_030 Hb_009851_110--Hb_004899_030 Hb_004656_060 Hb_004656_060 Hb_009851_110--Hb_004656_060 Hb_005895_040 Hb_005895_040 Hb_009851_110--Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_009851_110--Hb_000422_140 Hb_004701_030 Hb_004701_030 Hb_009851_110--Hb_004701_030 Hb_003091_010 Hb_003091_010 Hb_009851_110--Hb_003091_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0468019 0.0312579 0.0876706 0.0374552 0.255822 0.296105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0856742 0.0673472 0 0.0274528 0.132504

CAGE analysis