Hb_000768_010

Information

Type -
Description -
Location Contig768: 13383-19963
Sequence    

Annotation

kegg
ID tcc:TCM_025764
description Multidrug resistance pump, putative
nr
ID XP_006484781.1
description PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
swissprot
ID Q9SIA4
description MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1
trembl
ID A0A061F0G9
description MATE efflux family protein OS=Theobroma cacao GN=TCM_025764 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57481: 13677-14162 , PASA_asmbl_57482: 14180-14885 , PASA_asmbl_57483: 15032-15914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000768_010 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
2 Hb_000878_100 0.1641914824 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
3 Hb_002626_040 0.1873264632 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
4 Hb_006420_020 0.1994851773 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
5 Hb_156144_010 0.2028832009 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
6 Hb_000540_120 0.2030970942 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
7 Hb_010831_020 0.2041601629 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_000571_150 0.2176735586 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
9 Hb_001950_030 0.2188566845 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
10 Hb_011465_030 0.2199579418 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_001638_040 0.2206132771 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
12 Hb_002316_050 0.2206338363 - - conserved hypothetical protein [Ricinus communis]
13 Hb_040600_010 0.2212525602 - - hypothetical protein VITISV_036432 [Vitis vinifera]
14 Hb_001141_070 0.2215936692 - - PREDICTED: homocysteine S-methyltransferase 3 [Jatropha curcas]
15 Hb_002739_150 0.2242162126 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
16 Hb_001691_150 0.2256284126 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
17 Hb_001189_130 0.2256734572 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
18 Hb_032202_240 0.2264281586 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
19 Hb_003906_190 0.2264644772 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
20 Hb_001301_320 0.227496957 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]

Gene co-expression network

sample Hb_000768_010 Hb_000768_010 Hb_000878_100 Hb_000878_100 Hb_000768_010--Hb_000878_100 Hb_002626_040 Hb_002626_040 Hb_000768_010--Hb_002626_040 Hb_006420_020 Hb_006420_020 Hb_000768_010--Hb_006420_020 Hb_156144_010 Hb_156144_010 Hb_000768_010--Hb_156144_010 Hb_000540_120 Hb_000540_120 Hb_000768_010--Hb_000540_120 Hb_010831_020 Hb_010831_020 Hb_000768_010--Hb_010831_020 Hb_080147_080 Hb_080147_080 Hb_000878_100--Hb_080147_080 Hb_000878_100--Hb_006420_020 Hb_011465_030 Hb_011465_030 Hb_000878_100--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_000878_100--Hb_000265_250 Hb_040600_010 Hb_040600_010 Hb_000878_100--Hb_040600_010 Hb_003906_190 Hb_003906_190 Hb_002626_040--Hb_003906_190 Hb_032202_240 Hb_032202_240 Hb_002626_040--Hb_032202_240 Hb_002477_150 Hb_002477_150 Hb_002626_040--Hb_002477_150 Hb_006316_070 Hb_006316_070 Hb_002626_040--Hb_006316_070 Hb_002626_040--Hb_011465_030 Hb_002977_010 Hb_002977_010 Hb_002626_040--Hb_002977_010 Hb_000571_150 Hb_000571_150 Hb_006420_020--Hb_000571_150 Hb_006420_020--Hb_080147_080 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_006420_020--Hb_010831_020 Hb_006745_010 Hb_006745_010 Hb_006420_020--Hb_006745_010 Hb_001832_160 Hb_001832_160 Hb_156144_010--Hb_001832_160 Hb_086063_010 Hb_086063_010 Hb_156144_010--Hb_086063_010 Hb_002475_160 Hb_002475_160 Hb_156144_010--Hb_002475_160 Hb_009838_130 Hb_009838_130 Hb_156144_010--Hb_009838_130 Hb_156144_010--Hb_002626_040 Hb_031091_010 Hb_031091_010 Hb_156144_010--Hb_031091_010 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_000540_120--Hb_010831_020 Hb_000540_120--Hb_003125_030 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.0324 10.8617 0.749839 5.61109 8.10517 7.59002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.38041 1.00796 1.77101 0.116689 1.19962

CAGE analysis