Hb_000622_140

Information

Type -
Description -
Location Contig622: 138635-139135
Sequence    

Annotation

kegg
ID rcu:RCOM_0149710
description hypothetical protein
nr
ID XP_002532657.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M373
description Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1
trembl
ID B9T338
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0149710 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arabinogalactan protein 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51560: 138728-139308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000905_130 0.0979032624 - - PREDICTED: DNA-damage-repair/toleration protein DRT100 [Jatropha curcas]
3 Hb_000375_210 0.1038931557 - - -
4 Hb_015183_090 0.1088986432 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
5 Hb_003050_210 0.113580174 - - PREDICTED: cytochrome b561 domain-containing protein At4g18260-like [Populus euphratica]
6 Hb_000296_030 0.1140991879 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
7 Hb_000431_040 0.1159011811 - - PREDICTED: uncharacterized protein LOC105635551 [Jatropha curcas]
8 Hb_002215_020 0.1176220794 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
9 Hb_000566_060 0.1200330922 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009470_010 0.1224624699 - - -
11 Hb_034858_010 0.1234813787 - - -
12 Hb_006889_010 0.1239035712 - - PREDICTED: agmatine coumaroyltransferase-2-like [Jatropha curcas]
13 Hb_004317_020 0.1241281776 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
14 Hb_000325_090 0.1249799668 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
15 Hb_005539_330 0.1265803371 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
16 Hb_053058_010 0.1267229996 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003152_010 0.1278826406 - - -
18 Hb_000270_590 0.1284261387 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
19 Hb_093084_040 0.1284742114 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
20 Hb_000269_050 0.1300080927 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000622_140 Hb_000622_140 Hb_000905_130 Hb_000905_130 Hb_000622_140--Hb_000905_130 Hb_000375_210 Hb_000375_210 Hb_000622_140--Hb_000375_210 Hb_015183_090 Hb_015183_090 Hb_000622_140--Hb_015183_090 Hb_003050_210 Hb_003050_210 Hb_000622_140--Hb_003050_210 Hb_000296_030 Hb_000296_030 Hb_000622_140--Hb_000296_030 Hb_000431_040 Hb_000431_040 Hb_000622_140--Hb_000431_040 Hb_000270_590 Hb_000270_590 Hb_000905_130--Hb_000270_590 Hb_000905_130--Hb_000375_210 Hb_000905_130--Hb_003050_210 Hb_000628_080 Hb_000628_080 Hb_000905_130--Hb_000628_080 Hb_000905_130--Hb_000296_030 Hb_006846_050 Hb_006846_050 Hb_000905_130--Hb_006846_050 Hb_002028_250 Hb_002028_250 Hb_000375_210--Hb_002028_250 Hb_002757_020 Hb_002757_020 Hb_000375_210--Hb_002757_020 Hb_000389_120 Hb_000389_120 Hb_000375_210--Hb_000389_120 Hb_000375_210--Hb_000431_040 Hb_014508_020 Hb_014508_020 Hb_000375_210--Hb_014508_020 Hb_002601_030 Hb_002601_030 Hb_000375_210--Hb_002601_030 Hb_004162_150 Hb_004162_150 Hb_015183_090--Hb_004162_150 Hb_000352_210 Hb_000352_210 Hb_015183_090--Hb_000352_210 Hb_000331_380 Hb_000331_380 Hb_015183_090--Hb_000331_380 Hb_000431_050 Hb_000431_050 Hb_015183_090--Hb_000431_050 Hb_000307_160 Hb_000307_160 Hb_015183_090--Hb_000307_160 Hb_003152_010 Hb_003152_010 Hb_015183_090--Hb_003152_010 Hb_003050_210--Hb_000270_590 Hb_006603_010 Hb_006603_010 Hb_003050_210--Hb_006603_010 Hb_003050_210--Hb_006846_050 Hb_003050_210--Hb_000375_210 Hb_002701_200 Hb_002701_200 Hb_003050_210--Hb_002701_200 Hb_000269_050 Hb_000269_050 Hb_000296_030--Hb_000269_050 Hb_000296_030--Hb_000270_590 Hb_000224_070 Hb_000224_070 Hb_000296_030--Hb_000224_070 Hb_001597_040 Hb_001597_040 Hb_000296_030--Hb_001597_040 Hb_000296_030--Hb_002701_200 Hb_000431_040--Hb_002757_020 Hb_000431_040--Hb_000389_120 Hb_000431_040--Hb_002601_030 Hb_130357_010 Hb_130357_010 Hb_000431_040--Hb_130357_010 Hb_003729_040 Hb_003729_040 Hb_000431_040--Hb_003729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.59267 38.4919 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.07068 0.74971

CAGE analysis