Hb_000579_110

Information

Type -
Description -
Location Contig579: 140394-141715
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019781mg
description hypothetical protein
nr
ID XP_012071929.1
description PREDICTED: transmembrane protein 136 [Jatropha curcas]
swissprot
ID Q0VD42
description Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
trembl
ID A0A067KQQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04481 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 136

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49775: 140342-140828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000579_110 0.0 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
2 Hb_002200_030 0.1228137523 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
3 Hb_003417_050 0.1380288547 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_005656_120 0.1385515138 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
5 Hb_000599_150 0.1405200898 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
6 Hb_149694_010 0.1431734222 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_001500_130 0.1449768834 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
8 Hb_010810_060 0.1461322432 - - sterol desaturase, putative [Ricinus communis]
9 Hb_007483_090 0.1469034402 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000103_130 0.1472157272 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
11 Hb_001699_080 0.1477172209 - - unnamed protein product [Coffea canephora]
12 Hb_027472_060 0.1480463009 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
13 Hb_000302_320 0.1488258804 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
14 Hb_128986_010 0.1492731522 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000083_210 0.1506627521 - - Major facilitator superfamily protein, putative [Theobroma cacao]
16 Hb_000031_180 0.1512933041 - - sarcosine oxidase, putative [Ricinus communis]
17 Hb_052530_020 0.1515147455 - - cytochrome B5 isoform 1, putative [Ricinus communis]
18 Hb_002119_100 0.1524197207 - - cytochrome B561, putative [Ricinus communis]
19 Hb_002062_010 0.1536241926 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
20 Hb_001159_230 0.1541947916 - - Kinesin heavy chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000579_110 Hb_000579_110 Hb_002200_030 Hb_002200_030 Hb_000579_110--Hb_002200_030 Hb_003417_050 Hb_003417_050 Hb_000579_110--Hb_003417_050 Hb_005656_120 Hb_005656_120 Hb_000579_110--Hb_005656_120 Hb_000599_150 Hb_000599_150 Hb_000579_110--Hb_000599_150 Hb_149694_010 Hb_149694_010 Hb_000579_110--Hb_149694_010 Hb_001500_130 Hb_001500_130 Hb_000579_110--Hb_001500_130 Hb_002200_030--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_002200_030--Hb_128986_010 Hb_002200_030--Hb_003417_050 Hb_002062_010 Hb_002062_010 Hb_002200_030--Hb_002062_010 Hb_006922_120 Hb_006922_120 Hb_002200_030--Hb_006922_120 Hb_000392_350 Hb_000392_350 Hb_002200_030--Hb_000392_350 Hb_003417_050--Hb_128986_010 Hb_007483_090 Hb_007483_090 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_003417_050--Hb_002119_100 Hb_003417_050--Hb_005656_120 Hb_143629_170 Hb_143629_170 Hb_003417_050--Hb_143629_170 Hb_005656_120--Hb_002062_010 Hb_005656_120--Hb_128986_010 Hb_000017_180 Hb_000017_180 Hb_005656_120--Hb_000017_180 Hb_015561_010 Hb_015561_010 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_004032_280 Hb_004032_280 Hb_000599_150--Hb_004032_280 Hb_000031_180 Hb_000031_180 Hb_000599_150--Hb_000031_180 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000329_780 Hb_000329_780 Hb_000599_150--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_000599_150--Hb_002572_040 Hb_000599_150--Hb_007483_090 Hb_002740_050 Hb_002740_050 Hb_149694_010--Hb_002740_050 Hb_003855_060 Hb_003855_060 Hb_149694_010--Hb_003855_060 Hb_149694_010--Hb_143629_170 Hb_007904_150 Hb_007904_150 Hb_149694_010--Hb_007904_150 Hb_004943_020 Hb_004943_020 Hb_149694_010--Hb_004943_020 Hb_149694_010--Hb_052530_020 Hb_001433_090 Hb_001433_090 Hb_001500_130--Hb_001433_090 Hb_000002_110 Hb_000002_110 Hb_001500_130--Hb_000002_110 Hb_010589_010 Hb_010589_010 Hb_001500_130--Hb_010589_010 Hb_005010_030 Hb_005010_030 Hb_001500_130--Hb_005010_030 Hb_000083_210 Hb_000083_210 Hb_001500_130--Hb_000083_210 Hb_002477_190 Hb_002477_190 Hb_001500_130--Hb_002477_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.167055 1.12462 2.49396 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.128224 0.114323 0.026092 2.02734

CAGE analysis