Hb_000572_040

Information

Type -
Description -
Location Contig572: 80358-82352
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14815g
description hypothetical protein
nr
ID XP_006381652.1
description hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GB14
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14815g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000572_040 0.0 - - hypothetical protein POPTR_0006s14815g [Populus trichocarpa]
2 Hb_007904_170 0.1926304149 - - PREDICTED: anther-specific protein BCP1 [Jatropha curcas]
3 Hb_001123_100 0.2463368771 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
4 Hb_011628_020 0.2548865482 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001214_080 0.2549198633 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
6 Hb_002784_100 0.2590054536 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
7 Hb_000046_620 0.2620816321 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
8 Hb_002150_050 0.2725187197 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000622_080 0.274026821 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
10 Hb_004162_180 0.2797360259 - - zinc finger protein, putative [Ricinus communis]
11 Hb_001638_070 0.2862431293 transcription factor TF Family: bHLH Basic helix-loop-helix DNA-binding family protein [Theobroma cacao]
12 Hb_004108_110 0.2873568972 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005321_010 0.2929282408 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
14 Hb_012053_010 0.2949262199 - - srpk, putative [Ricinus communis]
15 Hb_027337_120 0.2950379996 - - PREDICTED: uncharacterized protein LOC104430249 [Eucalyptus grandis]
16 Hb_001766_030 0.2958887129 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
17 Hb_001164_030 0.2970236606 - - GMP synthase [glutamine-hydrolyzing] subunit A, putative [Ricinus communis]
18 Hb_000062_300 0.2976565761 - - PREDICTED: uncharacterized protein LOC105644761 [Jatropha curcas]
19 Hb_091889_010 0.3060849171 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_003891_080 0.3066213046 - - hypothetical protein JCGZ_16710 [Jatropha curcas]

Gene co-expression network

sample Hb_000572_040 Hb_000572_040 Hb_007904_170 Hb_007904_170 Hb_000572_040--Hb_007904_170 Hb_001123_100 Hb_001123_100 Hb_000572_040--Hb_001123_100 Hb_011628_020 Hb_011628_020 Hb_000572_040--Hb_011628_020 Hb_001214_080 Hb_001214_080 Hb_000572_040--Hb_001214_080 Hb_002784_100 Hb_002784_100 Hb_000572_040--Hb_002784_100 Hb_000046_620 Hb_000046_620 Hb_000572_040--Hb_000046_620 Hb_002150_050 Hb_002150_050 Hb_007904_170--Hb_002150_050 Hb_007904_170--Hb_000046_620 Hb_004162_180 Hb_004162_180 Hb_007904_170--Hb_004162_180 Hb_000045_210 Hb_000045_210 Hb_007904_170--Hb_000045_210 Hb_141194_010 Hb_141194_010 Hb_007904_170--Hb_141194_010 Hb_005054_270 Hb_005054_270 Hb_001123_100--Hb_005054_270 Hb_000140_360 Hb_000140_360 Hb_001123_100--Hb_000140_360 Hb_001123_100--Hb_004162_180 Hb_005162_100 Hb_005162_100 Hb_001123_100--Hb_005162_100 Hb_001102_210 Hb_001102_210 Hb_001123_100--Hb_001102_210 Hb_006738_030 Hb_006738_030 Hb_001123_100--Hb_006738_030 Hb_033834_050 Hb_033834_050 Hb_011628_020--Hb_033834_050 Hb_042871_010 Hb_042871_010 Hb_011628_020--Hb_042871_010 Hb_000943_060 Hb_000943_060 Hb_011628_020--Hb_000943_060 Hb_091889_010 Hb_091889_010 Hb_011628_020--Hb_091889_010 Hb_011628_020--Hb_002784_100 Hb_003891_080 Hb_003891_080 Hb_011628_020--Hb_003891_080 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001767_050 Hb_001767_050 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080 Hb_002784_100--Hb_033834_050 Hb_028271_020 Hb_028271_020 Hb_002784_100--Hb_028271_020 Hb_001449_100 Hb_001449_100 Hb_002784_100--Hb_001449_100 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_011609_110 Hb_011609_110 Hb_002784_100--Hb_011609_110 Hb_002784_100--Hb_042871_010 Hb_001863_420 Hb_001863_420 Hb_000046_620--Hb_001863_420 Hb_138455_010 Hb_138455_010 Hb_000046_620--Hb_138455_010 Hb_012053_010 Hb_012053_010 Hb_000046_620--Hb_012053_010 Hb_027337_120 Hb_027337_120 Hb_000046_620--Hb_027337_120 Hb_058143_010 Hb_058143_010 Hb_000046_620--Hb_058143_010 Hb_001511_140 Hb_001511_140 Hb_000046_620--Hb_001511_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.528388 0.219507 0.187683 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.166364 6.40297 1.72027 0.385717 1.42025

CAGE analysis