Hb_000566_020

Information

Type -
Description -
Location Contig566: 22461-23150
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13520g
description POPTRDRAFT_548052; hypothetical protein
nr
ID XP_002297853.1
description hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GMN7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13520g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_020 0.0 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
2 Hb_033594_070 0.1599256636 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
3 Hb_003581_300 0.2196822034 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
4 Hb_001936_140 0.2296726283 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
5 Hb_107504_010 0.2355812416 - - -
6 Hb_014834_010 0.249338995 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
7 Hb_054074_010 0.2526241386 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
8 Hb_004162_260 0.2570153341 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
9 Hb_000914_170 0.2595764397 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
10 Hb_001922_180 0.2599660799 - - hevamine-A precursor, putative [Ricinus communis]
11 Hb_002081_170 0.2686139376 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_001437_050 0.2686606039 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
13 Hb_000091_100 0.2700164017 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_006570_070 0.2712243404 - - cyclophilin [Hevea brasiliensis]
15 Hb_000007_040 0.2712522894 - - hypothetical protein MIMGU_mgv1a017616mg [Erythranthe guttata]
16 Hb_000032_050 0.2713607653 - - hypothetical protein RCOM_1691130 [Ricinus communis]
17 Hb_023386_010 0.27599006 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
18 Hb_000676_340 0.2762357467 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000567_280 0.2762998461 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
20 Hb_010582_010 0.2773470308 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]

Gene co-expression network

sample Hb_000566_020 Hb_000566_020 Hb_033594_070 Hb_033594_070 Hb_000566_020--Hb_033594_070 Hb_003581_300 Hb_003581_300 Hb_000566_020--Hb_003581_300 Hb_001936_140 Hb_001936_140 Hb_000566_020--Hb_001936_140 Hb_107504_010 Hb_107504_010 Hb_000566_020--Hb_107504_010 Hb_014834_010 Hb_014834_010 Hb_000566_020--Hb_014834_010 Hb_054074_010 Hb_054074_010 Hb_000566_020--Hb_054074_010 Hb_001529_070 Hb_001529_070 Hb_033594_070--Hb_001529_070 Hb_033594_070--Hb_014834_010 Hb_002081_170 Hb_002081_170 Hb_033594_070--Hb_002081_170 Hb_033594_070--Hb_003581_300 Hb_004102_030 Hb_004102_030 Hb_033594_070--Hb_004102_030 Hb_006018_060 Hb_006018_060 Hb_003581_300--Hb_006018_060 Hb_015430_010 Hb_015430_010 Hb_003581_300--Hb_015430_010 Hb_003581_300--Hb_054074_010 Hb_002260_030 Hb_002260_030 Hb_003581_300--Hb_002260_030 Hb_002157_040 Hb_002157_040 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_001936_140--Hb_107504_010 Hb_012799_020 Hb_012799_020 Hb_001936_140--Hb_012799_020 Hb_001936_140--Hb_054074_010 Hb_000567_280 Hb_000567_280 Hb_001936_140--Hb_000567_280 Hb_004650_100 Hb_004650_100 Hb_001936_140--Hb_004650_100 Hb_006570_070 Hb_006570_070 Hb_001936_140--Hb_006570_070 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_011379_010 Hb_011379_010 Hb_014834_010--Hb_011379_010 Hb_004162_260 Hb_004162_260 Hb_014834_010--Hb_004162_260 Hb_000914_170 Hb_000914_170 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_001045_040 Hb_001045_040 Hb_014834_010--Hb_001045_040 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.966401 0.0301097 1.26485 4.47172 0.141281 0.789502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8583 4.47749 1.73395 0.184936 1.28109

CAGE analysis