Hb_000414_090

Information

Type -
Description -
Location Contig414: 146920-147345
Sequence    

Annotation

kegg
ID rcu:RCOM_0660950
description hypothetical protein
nr
ID XP_002529250.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STD1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41002: 146987-147444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000414_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003058_240 0.0945608573 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
3 Hb_000347_060 0.1020261193 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
4 Hb_000633_030 0.1043394915 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
5 Hb_001357_290 0.1062600892 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
6 Hb_009476_080 0.1071154409 - - BnaA03g18920D [Brassica napus]
7 Hb_000173_240 0.1084290141 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000130_250 0.1093783755 - - PREDICTED: protein trichome birefringence-like 31 [Jatropha curcas]
9 Hb_050160_010 0.1099052913 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_010193_020 0.1166975669 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
11 Hb_000964_080 0.1175560852 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
12 Hb_000173_140 0.1195960705 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
13 Hb_001500_090 0.1200159947 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000103_440 0.1223216579 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
15 Hb_002078_180 0.1225291009 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
16 Hb_002835_360 0.122550622 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
17 Hb_009252_070 0.1226754154 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
18 Hb_010288_010 0.1228194245 - - Beta-glucosidase, putative [Ricinus communis]
19 Hb_000413_030 0.1232139859 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
20 Hb_011344_040 0.1232900273 - - PREDICTED: 21 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000414_090 Hb_000414_090 Hb_003058_240 Hb_003058_240 Hb_000414_090--Hb_003058_240 Hb_000347_060 Hb_000347_060 Hb_000414_090--Hb_000347_060 Hb_000633_030 Hb_000633_030 Hb_000414_090--Hb_000633_030 Hb_001357_290 Hb_001357_290 Hb_000414_090--Hb_001357_290 Hb_009476_080 Hb_009476_080 Hb_000414_090--Hb_009476_080 Hb_000173_240 Hb_000173_240 Hb_000414_090--Hb_000173_240 Hb_000103_440 Hb_000103_440 Hb_003058_240--Hb_000103_440 Hb_000402_060 Hb_000402_060 Hb_003058_240--Hb_000402_060 Hb_001140_290 Hb_001140_290 Hb_003058_240--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_003058_240--Hb_002151_070 Hb_003058_240--Hb_009476_080 Hb_002809_180 Hb_002809_180 Hb_003058_240--Hb_002809_180 Hb_002662_070 Hb_002662_070 Hb_000347_060--Hb_002662_070 Hb_010166_010 Hb_010166_010 Hb_000347_060--Hb_010166_010 Hb_005686_040 Hb_005686_040 Hb_000347_060--Hb_005686_040 Hb_001935_060 Hb_001935_060 Hb_000347_060--Hb_001935_060 Hb_010288_010 Hb_010288_010 Hb_000347_060--Hb_010288_010 Hb_001377_220 Hb_001377_220 Hb_000347_060--Hb_001377_220 Hb_000413_030 Hb_000413_030 Hb_000633_030--Hb_000413_030 Hb_001269_160 Hb_001269_160 Hb_000633_030--Hb_001269_160 Hb_005056_040 Hb_005056_040 Hb_000633_030--Hb_005056_040 Hb_001456_030 Hb_001456_030 Hb_000633_030--Hb_001456_030 Hb_031579_010 Hb_031579_010 Hb_000633_030--Hb_031579_010 Hb_064047_020 Hb_064047_020 Hb_000633_030--Hb_064047_020 Hb_000227_360 Hb_000227_360 Hb_001357_290--Hb_000227_360 Hb_011344_040 Hb_011344_040 Hb_001357_290--Hb_011344_040 Hb_000130_250 Hb_000130_250 Hb_001357_290--Hb_000130_250 Hb_001357_290--Hb_000347_060 Hb_061700_010 Hb_061700_010 Hb_001357_290--Hb_061700_010 Hb_000392_350 Hb_000392_350 Hb_001357_290--Hb_000392_350 Hb_002078_180 Hb_002078_180 Hb_009476_080--Hb_002078_180 Hb_015807_090 Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_002835_360 Hb_002835_360 Hb_009476_080--Hb_002835_360 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_000173_240--Hb_002078_180 Hb_000193_320 Hb_000193_320 Hb_000173_240--Hb_000193_320 Hb_000173_240--Hb_009476_080 Hb_000173_240--Hb_002835_360 Hb_000173_240--Hb_001935_060 Hb_000173_240--Hb_005686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0972039 0.0790681 1.09619 10.1491 0.141314 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.294766 6.23618

CAGE analysis