Hb_000359_270

Information

Type -
Description -
Location Contig359: 273424-275398
Sequence    

Annotation

kegg
ID rcu:RCOM_0539380
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002525881.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O81028
description Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1
trembl
ID B9SIR2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0539380 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_270 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000345_150 0.0891263196 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
3 Hb_002349_050 0.0896105914 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
4 Hb_004629_010 0.0939578997 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
5 Hb_000786_040 0.0997075744 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
6 Hb_034243_020 0.1023506323 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
7 Hb_117552_010 0.1056831754 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_003929_140 0.1076141371 - - DNA binding protein, putative [Ricinus communis]
9 Hb_006787_060 0.1076609086 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
10 Hb_003994_100 0.1105081597 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
11 Hb_003656_180 0.1107050717 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
12 Hb_001493_040 0.1112687132 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
13 Hb_133047_010 0.1120952601 - - xanthine dehydrogenase, putative [Ricinus communis]
14 Hb_000103_100 0.1127421167 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
15 Hb_001231_030 0.1131108283 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
16 Hb_015026_050 0.1146219177 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_002762_130 0.1147286866 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
18 Hb_002022_070 0.1155169342 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
19 Hb_074969_010 0.1164222099 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
20 Hb_007576_120 0.1173856757 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]

Gene co-expression network

sample Hb_000359_270 Hb_000359_270 Hb_000345_150 Hb_000345_150 Hb_000359_270--Hb_000345_150 Hb_002349_050 Hb_002349_050 Hb_000359_270--Hb_002349_050 Hb_004629_010 Hb_004629_010 Hb_000359_270--Hb_004629_010 Hb_000786_040 Hb_000786_040 Hb_000359_270--Hb_000786_040 Hb_034243_020 Hb_034243_020 Hb_000359_270--Hb_034243_020 Hb_117552_010 Hb_117552_010 Hb_000359_270--Hb_117552_010 Hb_002022_070 Hb_002022_070 Hb_000345_150--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_000345_150--Hb_005104_010 Hb_000345_150--Hb_000786_040 Hb_000345_150--Hb_004629_010 Hb_005539_090 Hb_005539_090 Hb_000345_150--Hb_005539_090 Hb_000345_150--Hb_034243_020 Hb_015475_020 Hb_015475_020 Hb_002349_050--Hb_015475_020 Hb_015026_050 Hb_015026_050 Hb_002349_050--Hb_015026_050 Hb_000813_100 Hb_000813_100 Hb_002349_050--Hb_000813_100 Hb_133047_010 Hb_133047_010 Hb_002349_050--Hb_133047_010 Hb_001221_160 Hb_001221_160 Hb_002349_050--Hb_001221_160 Hb_001946_300 Hb_001946_300 Hb_002349_050--Hb_001946_300 Hb_009112_010 Hb_009112_010 Hb_004629_010--Hb_009112_010 Hb_006787_060 Hb_006787_060 Hb_004629_010--Hb_006787_060 Hb_000120_660 Hb_000120_660 Hb_004629_010--Hb_000120_660 Hb_002392_030 Hb_002392_030 Hb_004629_010--Hb_002392_030 Hb_004629_010--Hb_005104_010 Hb_003929_140 Hb_003929_140 Hb_004629_010--Hb_003929_140 Hb_002784_010 Hb_002784_010 Hb_000786_040--Hb_002784_010 Hb_000230_090 Hb_000230_090 Hb_000786_040--Hb_000230_090 Hb_000786_040--Hb_005104_010 Hb_008253_030 Hb_008253_030 Hb_000786_040--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_000786_040--Hb_001767_140 Hb_004543_030 Hb_004543_030 Hb_034243_020--Hb_004543_030 Hb_004884_010 Hb_004884_010 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_010315_090 Hb_010315_090 Hb_034243_020--Hb_010315_090 Hb_034243_020--Hb_133047_010 Hb_003656_180 Hb_003656_180 Hb_117552_010--Hb_003656_180 Hb_002301_080 Hb_002301_080 Hb_117552_010--Hb_002301_080 Hb_002235_160 Hb_002235_160 Hb_117552_010--Hb_002235_160 Hb_117552_010--Hb_001493_040 Hb_002400_240 Hb_002400_240 Hb_117552_010--Hb_002400_240 Hb_000922_370 Hb_000922_370 Hb_117552_010--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09256 2.99891 1.17558 1.11448 1.83393 2.99246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.506664 0.722469 1.12282 0.994582 1.77114

CAGE analysis