Hb_000139_520

Information

Type -
Description -
Location Contig139: 529773-530222
Sequence    

Annotation

kegg
ID tcc:TCM_020511
description EF-hand calcium-binding domain-containing protein 4A
nr
ID XP_007034603.1
description EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ET99
description EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_520 0.0 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
2 Hb_001110_060 0.0935646173 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_000739_190 0.1040404182 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_003466_010 0.109301855 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
5 Hb_001789_230 0.1143996241 - - conserved hypothetical protein [Ricinus communis]
6 Hb_050898_030 0.1146921881 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000085_410 0.1148947612 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
8 Hb_002260_140 0.1157073432 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005111_020 0.116042205 - - hypothetical protein CISIN_1g0417821mg, partial [Citrus sinensis]
10 Hb_001818_010 0.1170012074 - - Disease resistance response protein, putative [Ricinus communis]
11 Hb_002918_270 0.1171345488 - - PREDICTED: protein E6-like [Populus euphratica]
12 Hb_000684_110 0.1183625612 - - hypothetical protein POPTR_0006s13250g [Populus trichocarpa]
13 Hb_001408_080 0.1184726854 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_004531_130 0.1185381001 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X2 [Jatropha curcas]
15 Hb_051212_020 0.1217035233 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
16 Hb_007122_020 0.1229139044 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_084812_010 0.123725098 - - PREDICTED: putative RING-H2 finger protein ATL21B [Vitis vinifera]
18 Hb_003427_070 0.1242947995 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
19 Hb_009079_020 0.1253513143 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
20 Hb_000866_130 0.1264830402 - - hypothetical protein JCGZ_14397 [Jatropha curcas]

Gene co-expression network

sample Hb_000139_520 Hb_000139_520 Hb_001110_060 Hb_001110_060 Hb_000139_520--Hb_001110_060 Hb_000739_190 Hb_000739_190 Hb_000139_520--Hb_000739_190 Hb_003466_010 Hb_003466_010 Hb_000139_520--Hb_003466_010 Hb_001789_230 Hb_001789_230 Hb_000139_520--Hb_001789_230 Hb_050898_030 Hb_050898_030 Hb_000139_520--Hb_050898_030 Hb_000085_410 Hb_000085_410 Hb_000139_520--Hb_000085_410 Hb_001408_080 Hb_001408_080 Hb_001110_060--Hb_001408_080 Hb_005111_020 Hb_005111_020 Hb_001110_060--Hb_005111_020 Hb_003032_110 Hb_003032_110 Hb_001110_060--Hb_003032_110 Hb_001427_100 Hb_001427_100 Hb_001110_060--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_001110_060--Hb_036520_030 Hb_001110_060--Hb_000085_410 Hb_003427_070 Hb_003427_070 Hb_000739_190--Hb_003427_070 Hb_030360_010 Hb_030360_010 Hb_000739_190--Hb_030360_010 Hb_000684_110 Hb_000684_110 Hb_000739_190--Hb_000684_110 Hb_039075_010 Hb_039075_010 Hb_000739_190--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000739_190--Hb_000310_040 Hb_000739_190--Hb_001110_060 Hb_005648_020 Hb_005648_020 Hb_003466_010--Hb_005648_020 Hb_000093_010 Hb_000093_010 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003466_010--Hb_008021_050 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002918_270 Hb_002918_270 Hb_001789_230--Hb_002918_270 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_000964_040 Hb_000964_040 Hb_001789_230--Hb_000964_040 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_001789_230--Hb_003466_010 Hb_050898_030--Hb_002918_270 Hb_020738_010 Hb_020738_010 Hb_050898_030--Hb_020738_010 Hb_007122_020 Hb_007122_020 Hb_050898_030--Hb_007122_020 Hb_015292_020 Hb_015292_020 Hb_050898_030--Hb_015292_020 Hb_001136_160 Hb_001136_160 Hb_050898_030--Hb_001136_160 Hb_001025_130 Hb_001025_130 Hb_050898_030--Hb_001025_130 Hb_000922_050 Hb_000922_050 Hb_000085_410--Hb_000922_050 Hb_000085_410--Hb_001408_080 Hb_000742_290 Hb_000742_290 Hb_000085_410--Hb_000742_290 Hb_000085_410--Hb_003427_070 Hb_004531_130 Hb_004531_130 Hb_000085_410--Hb_004531_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.62112 3.87367 11.9432 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.20855 0.318143 2.06704

CAGE analysis