Hb_000127_190

Information

Type -
Description -
Location Contig127: 229216-245033
Sequence    

Annotation

kegg
ID pop:POPTR_0005s21870g
description POPTRDRAFT_818606; GIGANTEA family protein
nr
ID XP_012073937.1
description PREDICTED: protein GIGANTEA [Jatropha curcas]
swissprot
ID Q9SQI2
description Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2
trembl
ID A0A067KK87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08319 PE=4 SV=1
Gene Ontology
ID GO:2000028
description protein gigantea

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08296: 230452-230709 , PASA_asmbl_08297: 229276-245276 , PASA_asmbl_08298: 229299-245276 , PASA_asmbl_08300: 231103-232874 , PASA_asmbl_08301: 242092-242325 , PASA_asmbl_08302: 243715-244110 , PASA_asmbl_08304: 229201-234397
cDNA
(Sanger)
(ID:Location)		 044_C20.ab1: 245158-245276

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_190 0.0 - - PREDICTED: protein GIGANTEA [Jatropha curcas]
2 Hb_002485_040 0.1375243742 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
3 Hb_012082_010 0.1471826168 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_002774_150 0.1482847996 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
5 Hb_012753_040 0.1519549297 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
6 Hb_007313_070 0.153161125 - - PREDICTED: gibberellin receptor GID1C [Jatropha curcas]
7 Hb_000015_160 0.1575967483 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
8 Hb_003605_220 0.1630305231 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
9 Hb_048755_020 0.1651673024 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
10 Hb_000130_280 0.1653093357 - - PREDICTED: transcription factor GTE3, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000358_200 0.1655177851 - - PREDICTED: uncharacterized protein LOC105637771 [Jatropha curcas]
12 Hb_008686_020 0.1675676682 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
13 Hb_004994_300 0.1690010642 - - synaptotagmin, putative [Ricinus communis]
14 Hb_002400_160 0.1698245862 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
15 Hb_044653_020 0.1713792508 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_000122_220 0.1722180444 - - Prenylated Rab acceptor protein, putative [Ricinus communis]
17 Hb_011161_020 0.1737133317 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
18 Hb_004324_060 0.1762926833 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
19 Hb_014834_060 0.1767559178 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
20 Hb_002918_320 0.1768031721 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000127_190 Hb_000127_190 Hb_002485_040 Hb_002485_040 Hb_000127_190--Hb_002485_040 Hb_012082_010 Hb_012082_010 Hb_000127_190--Hb_012082_010 Hb_002774_150 Hb_002774_150 Hb_000127_190--Hb_002774_150 Hb_012753_040 Hb_012753_040 Hb_000127_190--Hb_012753_040 Hb_007313_070 Hb_007313_070 Hb_000127_190--Hb_007313_070 Hb_000015_160 Hb_000015_160 Hb_000127_190--Hb_000015_160 Hb_000123_350 Hb_000123_350 Hb_002485_040--Hb_000123_350 Hb_002485_040--Hb_012082_010 Hb_001865_060 Hb_001865_060 Hb_002485_040--Hb_001865_060 Hb_002485_040--Hb_002774_150 Hb_125126_010 Hb_125126_010 Hb_002485_040--Hb_125126_010 Hb_000896_060 Hb_000896_060 Hb_002485_040--Hb_000896_060 Hb_044653_020 Hb_044653_020 Hb_012082_010--Hb_044653_020 Hb_012082_010--Hb_000896_060 Hb_003018_040 Hb_003018_040 Hb_012082_010--Hb_003018_040 Hb_000218_020 Hb_000218_020 Hb_012082_010--Hb_000218_020 Hb_000130_280 Hb_000130_280 Hb_012082_010--Hb_000130_280 Hb_004324_060 Hb_004324_060 Hb_002774_150--Hb_004324_060 Hb_012038_010 Hb_012038_010 Hb_002774_150--Hb_012038_010 Hb_172421_010 Hb_172421_010 Hb_002774_150--Hb_172421_010 Hb_004994_300 Hb_004994_300 Hb_002774_150--Hb_004994_300 Hb_002774_150--Hb_012753_040 Hb_012753_040--Hb_000015_160 Hb_009674_080 Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_000991_050 Hb_000991_050 Hb_012753_040--Hb_000991_050 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070 Hb_048755_020 Hb_048755_020 Hb_007313_070--Hb_048755_020 Hb_007313_070--Hb_004994_300 Hb_003605_220 Hb_003605_220 Hb_007313_070--Hb_003605_220 Hb_001437_010 Hb_001437_010 Hb_007313_070--Hb_001437_010 Hb_007313_070--Hb_172421_010 Hb_002248_120 Hb_002248_120 Hb_007313_070--Hb_002248_120 Hb_000015_160--Hb_000991_050 Hb_002387_070 Hb_002387_070 Hb_000015_160--Hb_002387_070 Hb_000015_160--Hb_002774_150 Hb_000015_160--Hb_009674_080 Hb_000631_140 Hb_000631_140 Hb_000015_160--Hb_000631_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2101 288.061 70.8082 45.3908 56.915 60.3633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7644 13.3124 49.4076 21.3344 143.743

CAGE analysis