Hb_000109_030

Information

Type -
Description -
Location Contig109: 27119-36590
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000109_030 0.0 - - -
2 Hb_002141_040 0.1419194958 - - -
3 Hb_032631_040 0.1654923599 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
4 Hb_002762_130 0.1668529473 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
5 Hb_000236_080 0.1680004195 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
6 Hb_003656_180 0.1686017296 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
7 Hb_009476_040 0.1699426158 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000359_270 0.1729587583 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_116929_010 0.1771663627 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
10 Hb_005725_170 0.1771922425 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
11 Hb_003623_030 0.1772663593 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
12 Hb_000162_020 0.1786563235 - - protein translocase, putative [Ricinus communis]
13 Hb_002551_070 0.1789073301 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
14 Hb_117552_010 0.179423521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000107_040 0.180971385 - - nuclear pore complex protein nup153, putative [Ricinus communis]
16 Hb_005181_110 0.1821920712 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
17 Hb_003440_050 0.182213401 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
18 Hb_074969_010 0.1825369345 - - hypothetical protein JCGZ_23339 [Jatropha curcas]
19 Hb_001472_090 0.1847289743 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
20 Hb_000158_100 0.1848562944 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000109_030 Hb_000109_030 Hb_002141_040 Hb_002141_040 Hb_000109_030--Hb_002141_040 Hb_032631_040 Hb_032631_040 Hb_000109_030--Hb_032631_040 Hb_002762_130 Hb_002762_130 Hb_000109_030--Hb_002762_130 Hb_000236_080 Hb_000236_080 Hb_000109_030--Hb_000236_080 Hb_003656_180 Hb_003656_180 Hb_000109_030--Hb_003656_180 Hb_009476_040 Hb_009476_040 Hb_000109_030--Hb_009476_040 Hb_012180_040 Hb_012180_040 Hb_002141_040--Hb_012180_040 Hb_002205_050 Hb_002205_050 Hb_002141_040--Hb_002205_050 Hb_172970_010 Hb_172970_010 Hb_002141_040--Hb_172970_010 Hb_002141_040--Hb_032631_040 Hb_009543_020 Hb_009543_020 Hb_002141_040--Hb_009543_020 Hb_002551_070 Hb_002551_070 Hb_032631_040--Hb_002551_070 Hb_003623_030 Hb_003623_030 Hb_032631_040--Hb_003623_030 Hb_117552_010 Hb_117552_010 Hb_032631_040--Hb_117552_010 Hb_032631_040--Hb_009476_040 Hb_002974_060 Hb_002974_060 Hb_032631_040--Hb_002974_060 Hb_005701_070 Hb_005701_070 Hb_032631_040--Hb_005701_070 Hb_000162_020 Hb_000162_020 Hb_002762_130--Hb_000162_020 Hb_018133_050 Hb_018133_050 Hb_002762_130--Hb_018133_050 Hb_034243_020 Hb_034243_020 Hb_002762_130--Hb_034243_020 Hb_000997_030 Hb_000997_030 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040 Hb_000023_060 Hb_000023_060 Hb_000236_080--Hb_000023_060 Hb_000107_040 Hb_000107_040 Hb_000236_080--Hb_000107_040 Hb_000181_180 Hb_000181_180 Hb_000236_080--Hb_000181_180 Hb_001900_110 Hb_001900_110 Hb_000236_080--Hb_001900_110 Hb_000236_080--Hb_000997_030 Hb_000236_080--Hb_003623_030 Hb_003656_180--Hb_117552_010 Hb_102269_010 Hb_102269_010 Hb_003656_180--Hb_102269_010 Hb_003884_030 Hb_003884_030 Hb_003656_180--Hb_003884_030 Hb_000785_040 Hb_000785_040 Hb_003656_180--Hb_000785_040 Hb_001473_090 Hb_001473_090 Hb_003656_180--Hb_001473_090 Hb_003656_180--Hb_002551_070 Hb_000183_020 Hb_000183_020 Hb_009476_040--Hb_000183_020 Hb_000922_370 Hb_000922_370 Hb_009476_040--Hb_000922_370 Hb_025194_040 Hb_025194_040 Hb_009476_040--Hb_025194_040 Hb_074969_010 Hb_074969_010 Hb_009476_040--Hb_074969_010 Hb_007426_130 Hb_007426_130 Hb_009476_040--Hb_007426_130 Hb_002784_110 Hb_002784_110 Hb_009476_040--Hb_002784_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01667 0.994297 0.172927 0.302586 0.534809 1.68728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0748067 0.529325 0.316786 0.716196 0.936841

CAGE analysis