Hb_000019_140

Information

Type -
Description -
Location Contig19: 80391-81057
Sequence    

Annotation

kegg
ID rcu:RCOM_1445410
description Light-regulated protein precursor, putative
nr
ID XP_002512845.1
description Light-regulated protein precursor, putative [Ricinus communis]
swissprot
ID Q03200
description Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1
trembl
ID B9RGY6
description Light-regulated protein, putative OS=Ricinus communis GN=RCOM_1445410 PE=4 SV=1
Gene Ontology
ID GO:0044699
description light-regulated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18877: 80250-81094 , PASA_asmbl_18878: 82046-86714
cDNA
(Sanger)
(ID:Location)		 041_D18.ab1: 80250-81094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_140 0.0 - - Light-regulated protein precursor, putative [Ricinus communis]
2 Hb_000071_140 0.2008530488 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
3 Hb_000069_730 0.2166243197 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
4 Hb_015934_030 0.2225507112 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001489_120 0.2234062471 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
6 Hb_006111_030 0.2313147233 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
7 Hb_000221_060 0.2394886439 - - -
8 Hb_015175_010 0.2413529838 - - hypothetical protein JCGZ_17977 [Jatropha curcas]
9 Hb_000566_190 0.2418296118 - - unnamed protein product [Vitis vinifera]
10 Hb_005701_080 0.2469573181 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000084_240 0.2479228322 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
12 Hb_002534_050 0.2482139366 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
13 Hb_001258_150 0.2520706393 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
14 Hb_003120_050 0.2523578838 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
15 Hb_004787_100 0.2553156345 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
16 Hb_008246_090 0.2560412075 - - -
17 Hb_000364_040 0.2563674833 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
18 Hb_000186_200 0.2603709325 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_001114_230 0.261689255 - - -
20 Hb_002897_050 0.2634369819 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]

Gene co-expression network

sample Hb_000019_140 Hb_000019_140 Hb_000071_140 Hb_000071_140 Hb_000019_140--Hb_000071_140 Hb_000069_730 Hb_000069_730 Hb_000019_140--Hb_000069_730 Hb_015934_030 Hb_015934_030 Hb_000019_140--Hb_015934_030 Hb_001489_120 Hb_001489_120 Hb_000019_140--Hb_001489_120 Hb_006111_030 Hb_006111_030 Hb_000019_140--Hb_006111_030 Hb_000221_060 Hb_000221_060 Hb_000019_140--Hb_000221_060 Hb_000071_140--Hb_001489_120 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000071_140--Hb_000069_730 Hb_004032_310 Hb_004032_310 Hb_000071_140--Hb_004032_310 Hb_001258_150 Hb_001258_150 Hb_000071_140--Hb_001258_150 Hb_000084_240 Hb_000084_240 Hb_000069_730--Hb_000084_240 Hb_000069_730--Hb_001258_150 Hb_000069_730--Hb_002534_050 Hb_005499_010 Hb_005499_010 Hb_000069_730--Hb_005499_010 Hb_090782_010 Hb_090782_010 Hb_000069_730--Hb_090782_010 Hb_000364_040 Hb_000364_040 Hb_015934_030--Hb_000364_040 Hb_000077_390 Hb_000077_390 Hb_015934_030--Hb_000077_390 Hb_003207_100 Hb_003207_100 Hb_015934_030--Hb_003207_100 Hb_003605_240 Hb_003605_240 Hb_015934_030--Hb_003605_240 Hb_003077_050 Hb_003077_050 Hb_015934_030--Hb_003077_050 Hb_007007_070 Hb_007007_070 Hb_015934_030--Hb_007007_070 Hb_001489_120--Hb_001258_150 Hb_001489_120--Hb_004032_310 Hb_000803_060 Hb_000803_060 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_001865_060 Hb_001865_060 Hb_006111_030--Hb_001865_060 Hb_012725_040 Hb_012725_040 Hb_006111_030--Hb_012725_040 Hb_006111_030--Hb_000071_140 Hb_006111_030--Hb_001258_150 Hb_006111_030--Hb_004032_310 Hb_002485_040 Hb_002485_040 Hb_006111_030--Hb_002485_040 Hb_000221_060--Hb_000803_060 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000221_060--Hb_000071_140 Hb_000221_060--Hb_006414_020 Hb_000103_400 Hb_000103_400 Hb_000221_060--Hb_000103_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27755 25.3349 8.18594 1.51083 0.364153 5.70906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37106 3.1586 0.448668 1.2791 3.20828

CAGE analysis