Hb_125948_010

Information

Type -
Description -
Location Contig125948: 13878-14517
Sequence    

Annotation

kegg
ID rcu:RCOM_0683570
description heat-shock protein, putative
nr
ID XP_002529170.1
description heat-shock protein, putative [Ricinus communis]
swissprot
ID Q9SYG1
description 17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1
trembl
ID B9ST51
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0683570 PE=3 SV=1
Gene Ontology
ID GO:0006457
description kda class iii heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125948_010 0.0 - - heat-shock protein, putative [Ricinus communis]
2 Hb_000122_060 0.1552557324 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
3 Hb_044653_010 0.2159509457 - - PREDICTED: GTPase Era, mitochondrial [Jatropha curcas]
4 Hb_002984_020 0.2378890515 - - hypothetical protein EUGRSUZ_J02661 [Eucalyptus grandis]
5 Hb_002039_050 0.2428915309 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
6 Hb_002431_010 0.2509021181 - - PREDICTED: uncharacterized protein LOC104599557 isoform X2 [Nelumbo nucifera]
7 Hb_001103_070 0.2573097777 - - Patellin-3, putative [Ricinus communis]
8 Hb_070541_030 0.2616151804 - - -
9 Hb_111876_010 0.2620094004 - - Auxin response factor, putative [Ricinus communis]
10 Hb_000732_240 0.267465374 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
11 Hb_000099_190 0.2683121513 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
12 Hb_145317_010 0.2694101337 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
13 Hb_008092_030 0.2717490888 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
14 Hb_000571_150 0.2732915656 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
15 Hb_006286_010 0.2737017323 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
16 Hb_001178_040 0.2756703676 desease resistance Gene Name: ABC_trans_N PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
17 Hb_030312_010 0.279496745 - - conserved hypothetical protein [Ricinus communis]
18 Hb_179679_010 0.2832497247 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
19 Hb_005504_020 0.2846434987 - - -
20 Hb_001147_080 0.2846435935 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_125948_010 Hb_125948_010 Hb_000122_060 Hb_000122_060 Hb_125948_010--Hb_000122_060 Hb_044653_010 Hb_044653_010 Hb_125948_010--Hb_044653_010 Hb_002984_020 Hb_002984_020 Hb_125948_010--Hb_002984_020 Hb_002039_050 Hb_002039_050 Hb_125948_010--Hb_002039_050 Hb_002431_010 Hb_002431_010 Hb_125948_010--Hb_002431_010 Hb_001103_070 Hb_001103_070 Hb_125948_010--Hb_001103_070 Hb_000122_060--Hb_002039_050 Hb_000122_060--Hb_044653_010 Hb_111876_010 Hb_111876_010 Hb_000122_060--Hb_111876_010 Hb_003438_060 Hb_003438_060 Hb_000122_060--Hb_003438_060 Hb_001506_030 Hb_001506_030 Hb_000122_060--Hb_001506_030 Hb_044653_010--Hb_001506_030 Hb_163400_010 Hb_163400_010 Hb_044653_010--Hb_163400_010 Hb_070541_030 Hb_070541_030 Hb_044653_010--Hb_070541_030 Hb_014361_050 Hb_014361_050 Hb_044653_010--Hb_014361_050 Hb_007951_090 Hb_007951_090 Hb_002984_020--Hb_007951_090 Hb_003925_130 Hb_003925_130 Hb_002984_020--Hb_003925_130 Hb_072290_010 Hb_072290_010 Hb_002984_020--Hb_072290_010 Hb_010810_040 Hb_010810_040 Hb_002984_020--Hb_010810_040 Hb_000304_040 Hb_000304_040 Hb_002984_020--Hb_000304_040 Hb_178711_010 Hb_178711_010 Hb_002984_020--Hb_178711_010 Hb_011164_010 Hb_011164_010 Hb_002039_050--Hb_011164_010 Hb_002999_060 Hb_002999_060 Hb_002039_050--Hb_002999_060 Hb_006745_010 Hb_006745_010 Hb_002039_050--Hb_006745_010 Hb_000062_030 Hb_000062_030 Hb_002039_050--Hb_000062_030 Hb_001504_090 Hb_001504_090 Hb_002039_050--Hb_001504_090 Hb_013394_060 Hb_013394_060 Hb_002039_050--Hb_013394_060 Hb_012258_020 Hb_012258_020 Hb_002431_010--Hb_012258_020 Hb_003835_090 Hb_003835_090 Hb_002431_010--Hb_003835_090 Hb_006711_070 Hb_006711_070 Hb_002431_010--Hb_006711_070 Hb_055488_020 Hb_055488_020 Hb_002431_010--Hb_055488_020 Hb_030312_010 Hb_030312_010 Hb_002431_010--Hb_030312_010 Hb_170674_010 Hb_170674_010 Hb_002431_010--Hb_170674_010 Hb_000732_240 Hb_000732_240 Hb_001103_070--Hb_000732_240 Hb_001004_120 Hb_001004_120 Hb_001103_070--Hb_001004_120 Hb_000099_190 Hb_000099_190 Hb_001103_070--Hb_000099_190 Hb_145317_010 Hb_145317_010 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89163 16.821 4.39349 21.7066 12.2359 5.67764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.245801 0.675942 0.16534 0 0.182619

CAGE analysis