Hb_067096_010

Information

Type -
Description -
Location Contig67096: 2140-6977
Sequence    

Annotation

kegg
ID rcu:RCOM_0771810
description valyl-tRNA synthetase, putative (EC:6.1.1.9)
nr
ID XP_012078515.1
description PREDICTED: valine--tRNA ligase [Jatropha curcas]
swissprot
ID P93736
description Valine--tRNA ligase OS=Arabidopsis thaliana GN=VALRS PE=2 SV=2
trembl
ID A0A067K8S9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13191 PE=3 SV=1
Gene Ontology
ID GO:0002161
description valine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067096_010 0.0 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
2 Hb_001976_040 0.1870322459 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
3 Hb_006637_070 0.1953480369 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
4 Hb_000084_160 0.1974891046 - - SGNH hydrolase-type esterase superfamily protein, putative [Theobroma cacao]
5 Hb_000619_010 0.199981644 - - TPA: hypothetical protein ZEAMMB73_187549 [Zea mays]
6 Hb_000286_200 0.2005429983 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
7 Hb_002814_070 0.2010063466 - - PREDICTED: uncharacterized protein LOC104877459 [Vitis vinifera]
8 Hb_001386_110 0.2041171612 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
9 Hb_000003_720 0.2051873595 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
10 Hb_000086_230 0.2063053523 - - serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_003994_120 0.2097153147 - - PREDICTED: uncharacterized protein LOC105130433 isoform X1 [Populus euphratica]
12 Hb_000183_090 0.2121655894 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
13 Hb_101733_030 0.2134532608 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
14 Hb_055320_010 0.213477671 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
15 Hb_040734_010 0.2137533337 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
16 Hb_002811_100 0.2184749556 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
17 Hb_000012_410 0.2193987846 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
18 Hb_020025_010 0.2220794464 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
19 Hb_001489_090 0.2225243052 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
20 Hb_010174_150 0.2250359641 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_067096_010 Hb_067096_010 Hb_001976_040 Hb_001976_040 Hb_067096_010--Hb_001976_040 Hb_006637_070 Hb_006637_070 Hb_067096_010--Hb_006637_070 Hb_000084_160 Hb_000084_160 Hb_067096_010--Hb_000084_160 Hb_000619_010 Hb_000619_010 Hb_067096_010--Hb_000619_010 Hb_000286_200 Hb_000286_200 Hb_067096_010--Hb_000286_200 Hb_002814_070 Hb_002814_070 Hb_067096_010--Hb_002814_070 Hb_000465_070 Hb_000465_070 Hb_001976_040--Hb_000465_070 Hb_002609_200 Hb_002609_200 Hb_001976_040--Hb_002609_200 Hb_007827_010 Hb_007827_010 Hb_001976_040--Hb_007827_010 Hb_000035_480 Hb_000035_480 Hb_001976_040--Hb_000035_480 Hb_001489_090 Hb_001489_090 Hb_001976_040--Hb_001489_090 Hb_001910_010 Hb_001910_010 Hb_001976_040--Hb_001910_010 Hb_003994_120 Hb_003994_120 Hb_006637_070--Hb_003994_120 Hb_006637_070--Hb_001489_090 Hb_003465_030 Hb_003465_030 Hb_006637_070--Hb_003465_030 Hb_006570_080 Hb_006570_080 Hb_006637_070--Hb_006570_080 Hb_023001_040 Hb_023001_040 Hb_006637_070--Hb_023001_040 Hb_007423_050 Hb_007423_050 Hb_006637_070--Hb_007423_050 Hb_000086_230 Hb_000086_230 Hb_000084_160--Hb_000086_230 Hb_012633_040 Hb_012633_040 Hb_000084_160--Hb_012633_040 Hb_101733_030 Hb_101733_030 Hb_000084_160--Hb_101733_030 Hb_001828_060 Hb_001828_060 Hb_000084_160--Hb_001828_060 Hb_000696_290 Hb_000696_290 Hb_000084_160--Hb_000696_290 Hb_000084_160--Hb_002814_070 Hb_000347_250 Hb_000347_250 Hb_000619_010--Hb_000347_250 Hb_040734_010 Hb_040734_010 Hb_000619_010--Hb_040734_010 Hb_001589_010 Hb_001589_010 Hb_000619_010--Hb_001589_010 Hb_020025_010 Hb_020025_010 Hb_000619_010--Hb_020025_010 Hb_002820_020 Hb_002820_020 Hb_000619_010--Hb_002820_020 Hb_139294_010 Hb_139294_010 Hb_000619_010--Hb_139294_010 Hb_000510_240 Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_000286_200--Hb_000012_410 Hb_010815_020 Hb_010815_020 Hb_000286_200--Hb_010815_020 Hb_000286_060 Hb_000286_060 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_002631_030 Hb_002631_030 Hb_002814_070--Hb_002631_030 Hb_000329_760 Hb_000329_760 Hb_002814_070--Hb_000329_760 Hb_031340_050 Hb_031340_050 Hb_002814_070--Hb_031340_050 Hb_002197_050 Hb_002197_050 Hb_002814_070--Hb_002197_050 Hb_009687_010 Hb_009687_010 Hb_002814_070--Hb_009687_010 Hb_000137_090 Hb_000137_090 Hb_002814_070--Hb_000137_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379829 0.57907 0.253221 0.828274 1.23411 0.0836797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.816041 1.79698 0.313787 1.74029 1.22022

CAGE analysis