Hb_012368_010

Information

Type -
Description -
Location Contig12368: 4145-6100
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00390g
description POPTRDRAFT_578074; hypothetical protein
nr
ID XP_012077404.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067KGR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07754 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_000062_100 0.1768361433 - - -
3 Hb_000540_050 0.1882284123 - - PREDICTED: 125 kDa kinesin-related protein-like [Jatropha curcas]
4 Hb_002026_170 0.1993764634 - - kinesin heavy chain, putative [Ricinus communis]
5 Hb_002234_060 0.2389492375 - - F-box protein, atfbl3, putative [Ricinus communis]
6 Hb_000032_440 0.2411357674 - - protein with unknown function [Ricinus communis]
7 Hb_000708_040 0.2416764177 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001606_060 0.2478756899 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001109_180 0.2490748034 - - PREDICTED: protein BREVIS RADIX-like [Populus euphratica]
10 Hb_004225_030 0.2515109117 - - hypothetical protein F383_15788 [Gossypium arboreum]
11 Hb_000331_460 0.2525078457 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
12 Hb_002284_310 0.2528909654 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
13 Hb_001059_160 0.2544856909 - - hexose transporter 1 [Hevea brasiliensis]
14 Hb_006405_050 0.2553341657 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
15 Hb_000072_090 0.2564755045 - - PREDICTED: SEC14 cytosolic factor [Jatropha curcas]
16 Hb_114310_110 0.2565429952 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_007803_030 0.2588902439 - - PREDICTED: uncharacterized protein LOC105632791 isoform X1 [Jatropha curcas]
18 Hb_000317_490 0.2597200902 - - Gibberellin receptor GID1, putative [Ricinus communis]
19 Hb_001472_060 0.262202493 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
20 Hb_007831_020 0.2655959014 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012368_010 Hb_012368_010 Hb_000062_100 Hb_000062_100 Hb_012368_010--Hb_000062_100 Hb_000540_050 Hb_000540_050 Hb_012368_010--Hb_000540_050 Hb_002026_170 Hb_002026_170 Hb_012368_010--Hb_002026_170 Hb_002234_060 Hb_002234_060 Hb_012368_010--Hb_002234_060 Hb_000032_440 Hb_000032_440 Hb_012368_010--Hb_000032_440 Hb_000708_040 Hb_000708_040 Hb_012368_010--Hb_000708_040 Hb_005285_020 Hb_005285_020 Hb_000062_100--Hb_005285_020 Hb_004032_320 Hb_004032_320 Hb_000062_100--Hb_004032_320 Hb_000062_100--Hb_002026_170 Hb_000854_040 Hb_000854_040 Hb_000062_100--Hb_000854_040 Hb_000078_080 Hb_000078_080 Hb_000062_100--Hb_000078_080 Hb_000540_050--Hb_002026_170 Hb_002284_310 Hb_002284_310 Hb_000540_050--Hb_002284_310 Hb_114310_110 Hb_114310_110 Hb_000540_050--Hb_114310_110 Hb_004223_190 Hb_004223_190 Hb_000540_050--Hb_004223_190 Hb_000540_050--Hb_000032_440 Hb_000103_530 Hb_000103_530 Hb_000540_050--Hb_000103_530 Hb_000019_150 Hb_000019_150 Hb_002026_170--Hb_000019_150 Hb_001472_060 Hb_001472_060 Hb_002026_170--Hb_001472_060 Hb_000808_050 Hb_000808_050 Hb_002026_170--Hb_000808_050 Hb_001511_050 Hb_001511_050 Hb_002026_170--Hb_001511_050 Hb_002498_140 Hb_002498_140 Hb_002026_170--Hb_002498_140 Hb_181729_010 Hb_181729_010 Hb_002234_060--Hb_181729_010 Hb_000317_490 Hb_000317_490 Hb_002234_060--Hb_000317_490 Hb_002016_170 Hb_002016_170 Hb_002234_060--Hb_002016_170 Hb_000836_450 Hb_000836_450 Hb_002234_060--Hb_000836_450 Hb_000025_210 Hb_000025_210 Hb_002234_060--Hb_000025_210 Hb_004225_030 Hb_004225_030 Hb_002234_060--Hb_004225_030 Hb_000032_440--Hb_000317_490 Hb_000032_440--Hb_000708_040 Hb_000032_440--Hb_002284_310 Hb_000243_080 Hb_000243_080 Hb_000032_440--Hb_000243_080 Hb_002183_070 Hb_002183_070 Hb_000032_440--Hb_002183_070 Hb_003016_020 Hb_003016_020 Hb_000032_440--Hb_003016_020 Hb_000708_040--Hb_002284_310 Hb_000708_040--Hb_000317_490 Hb_003688_050 Hb_003688_050 Hb_000708_040--Hb_003688_050 Hb_000708_040--Hb_002234_060 Hb_000331_460 Hb_000331_460 Hb_000708_040--Hb_000331_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0482897 0.0133515 0.0853386 0.0513272 0.0301567 0.0141332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.073451 0 0.107926 0.0115562 0.0600563

CAGE analysis