Hb_010521_010

Information

Type -
Description -
Location Contig10521: 1002-2055
Sequence    

Annotation

kegg
ID cic:CICLE_v10026841mg
description hypothetical protein
nr
ID XP_006426971.1
description hypothetical protein CICLE_v10026841mg [Citrus clementina]
swissprot
ID Q43292
description 60S ribosomal protein L37-2 OS=Arabidopsis thaliana GN=RPL37B PE=3 SV=2
trembl
ID A0A067F063
description Ribosomal protein L37 OS=Citrus sinensis GN=CISIN_1g034400mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010521_010 0.0 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
2 Hb_000189_230 0.262669578 - - Auxin-induced protein [Aegilops tauschii]
3 Hb_000976_330 0.2689855616 - - hypothetical protein POPTR_0001s05180g [Populus trichocarpa]
4 Hb_000243_110 0.2696095447 - - PREDICTED: WAT1-related protein At3g53210-like [Jatropha curcas]
5 Hb_000315_030 0.2902700471 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_010810_090 0.2949940475 - - -
7 Hb_000089_150 0.3128772223 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
8 Hb_005389_110 0.3202397102 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
9 Hb_134894_010 0.3219511328 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Gossypium raimondii]
10 Hb_002477_220 0.3227488507 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
11 Hb_001410_100 0.3233767626 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
12 Hb_000544_100 0.3235346845 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
13 Hb_003238_030 0.3290957238 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
14 Hb_009848_010 0.3320170776 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
15 Hb_002273_060 0.3323161807 - - conserved hypothetical protein [Ricinus communis]
16 Hb_037960_010 0.3355251459 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000217_060 0.3393431273 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000483_110 0.3422084205 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 2, partial [Theobroma cacao]
19 Hb_000295_010 0.3433910155 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000402_010 0.3448445592 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]

Gene co-expression network

sample Hb_010521_010 Hb_010521_010 Hb_000189_230 Hb_000189_230 Hb_010521_010--Hb_000189_230 Hb_000976_330 Hb_000976_330 Hb_010521_010--Hb_000976_330 Hb_000243_110 Hb_000243_110 Hb_010521_010--Hb_000243_110 Hb_000315_030 Hb_000315_030 Hb_010521_010--Hb_000315_030 Hb_010810_090 Hb_010810_090 Hb_010521_010--Hb_010810_090 Hb_000089_150 Hb_000089_150 Hb_010521_010--Hb_000089_150 Hb_002259_040 Hb_002259_040 Hb_000189_230--Hb_002259_040 Hb_000608_060 Hb_000608_060 Hb_000189_230--Hb_000608_060 Hb_002299_050 Hb_002299_050 Hb_000189_230--Hb_002299_050 Hb_000009_620 Hb_000009_620 Hb_000189_230--Hb_000009_620 Hb_030291_020 Hb_030291_020 Hb_000189_230--Hb_030291_020 Hb_002273_060 Hb_002273_060 Hb_000976_330--Hb_002273_060 Hb_002273_090 Hb_002273_090 Hb_000976_330--Hb_002273_090 Hb_005288_040 Hb_005288_040 Hb_000976_330--Hb_005288_040 Hb_000976_330--Hb_000243_110 Hb_000645_110 Hb_000645_110 Hb_000976_330--Hb_000645_110 Hb_000011_480 Hb_000011_480 Hb_000243_110--Hb_000011_480 Hb_004894_010 Hb_004894_010 Hb_000243_110--Hb_004894_010 Hb_037960_010 Hb_037960_010 Hb_000243_110--Hb_037960_010 Hb_000025_020 Hb_000025_020 Hb_000243_110--Hb_000025_020 Hb_001410_100 Hb_001410_100 Hb_000243_110--Hb_001410_100 Hb_000483_110 Hb_000483_110 Hb_000243_110--Hb_000483_110 Hb_001351_040 Hb_001351_040 Hb_000315_030--Hb_001351_040 Hb_003384_070 Hb_003384_070 Hb_000315_030--Hb_003384_070 Hb_000061_380 Hb_000061_380 Hb_000315_030--Hb_000061_380 Hb_003640_030 Hb_003640_030 Hb_000315_030--Hb_003640_030 Hb_000640_150 Hb_000640_150 Hb_000315_030--Hb_000640_150 Hb_002477_220 Hb_002477_220 Hb_000315_030--Hb_002477_220 Hb_007194_020 Hb_007194_020 Hb_010810_090--Hb_007194_020 Hb_058148_010 Hb_058148_010 Hb_010810_090--Hb_058148_010 Hb_000862_020 Hb_000862_020 Hb_010810_090--Hb_000862_020 Hb_063472_010 Hb_063472_010 Hb_010810_090--Hb_063472_010 Hb_045527_010 Hb_045527_010 Hb_010810_090--Hb_045527_010 Hb_010810_090--Hb_001410_100 Hb_063433_010 Hb_063433_010 Hb_000089_150--Hb_063433_010 Hb_002019_010 Hb_002019_010 Hb_000089_150--Hb_002019_010 Hb_003929_060 Hb_003929_060 Hb_000089_150--Hb_003929_060 Hb_005389_110 Hb_005389_110 Hb_000089_150--Hb_005389_110 Hb_001313_010 Hb_001313_010 Hb_000089_150--Hb_001313_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128561 0.166385 0 0 0.0648897 0.326979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.596284 0

CAGE analysis