Hb_000089_150

Information

Type -
Description -
Location Contig89: 137239-140105
Sequence    

Annotation

kegg
ID vvi:104880543
description uncharacterized LOC104880543
nr
ID XP_012074506.1
description PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061E4P4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_150 0.0 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
2 Hb_063433_010 0.1737019653 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
3 Hb_002019_010 0.2627195374 - - -
4 Hb_003929_060 0.3071699791 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
5 Hb_005389_110 0.3117030978 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
6 Hb_010521_010 0.3128772223 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
7 Hb_001313_010 0.3170237934 - - polyprotein [Ananas comosus]
8 Hb_000270_210 0.3184810603 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
9 Hb_018616_030 0.3195791225 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
10 Hb_000521_310 0.3218857233 - - -
11 Hb_000217_060 0.3356385873 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_018344_010 0.3358893543 - - PREDICTED: endochitinase 2-like [Populus euphratica]
13 Hb_002259_040 0.3389915217 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_007467_020 0.3451468003 - - -
15 Hb_002333_030 0.3498511133 - - -
16 Hb_116125_010 0.3565544719 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
17 Hb_005504_010 0.3576825531 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
18 Hb_000189_230 0.3598525379 - - Auxin-induced protein [Aegilops tauschii]
19 Hb_084858_010 0.3635422997 - - Uncharacterized protein isoform 3 [Theobroma cacao]
20 Hb_000061_040 0.3681545839 - - PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]

Gene co-expression network

sample Hb_000089_150 Hb_000089_150 Hb_063433_010 Hb_063433_010 Hb_000089_150--Hb_063433_010 Hb_002019_010 Hb_002019_010 Hb_000089_150--Hb_002019_010 Hb_003929_060 Hb_003929_060 Hb_000089_150--Hb_003929_060 Hb_005389_110 Hb_005389_110 Hb_000089_150--Hb_005389_110 Hb_010521_010 Hb_010521_010 Hb_000089_150--Hb_010521_010 Hb_001313_010 Hb_001313_010 Hb_000089_150--Hb_001313_010 Hb_005504_010 Hb_005504_010 Hb_063433_010--Hb_005504_010 Hb_001396_170 Hb_001396_170 Hb_063433_010--Hb_001396_170 Hb_101040_010 Hb_101040_010 Hb_063433_010--Hb_101040_010 Hb_032076_010 Hb_032076_010 Hb_063433_010--Hb_032076_010 Hb_000217_060 Hb_000217_060 Hb_063433_010--Hb_000217_060 Hb_002333_030 Hb_002333_030 Hb_002019_010--Hb_002333_030 Hb_002019_010--Hb_001313_010 Hb_007467_020 Hb_007467_020 Hb_002019_010--Hb_007467_020 Hb_000724_030 Hb_000724_030 Hb_002019_010--Hb_000724_030 Hb_092855_030 Hb_092855_030 Hb_002019_010--Hb_092855_030 Hb_000061_040 Hb_000061_040 Hb_003929_060--Hb_000061_040 Hb_114261_010 Hb_114261_010 Hb_003929_060--Hb_114261_010 Hb_003929_060--Hb_005389_110 Hb_000828_040 Hb_000828_040 Hb_003929_060--Hb_000828_040 Hb_002235_140 Hb_002235_140 Hb_003929_060--Hb_002235_140 Hb_000160_200 Hb_000160_200 Hb_003929_060--Hb_000160_200 Hb_018344_010 Hb_018344_010 Hb_005389_110--Hb_018344_010 Hb_000270_210 Hb_000270_210 Hb_005389_110--Hb_000270_210 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_002735_040 Hb_002735_040 Hb_005389_110--Hb_002735_040 Hb_000640_150 Hb_000640_150 Hb_005389_110--Hb_000640_150 Hb_000189_230 Hb_000189_230 Hb_010521_010--Hb_000189_230 Hb_000976_330 Hb_000976_330 Hb_010521_010--Hb_000976_330 Hb_000243_110 Hb_000243_110 Hb_010521_010--Hb_000243_110 Hb_000315_030 Hb_000315_030 Hb_010521_010--Hb_000315_030 Hb_010810_090 Hb_010810_090 Hb_010521_010--Hb_010810_090 Hb_001313_010--Hb_007467_020 Hb_178389_010 Hb_178389_010 Hb_001313_010--Hb_178389_010 Hb_005671_030 Hb_005671_030 Hb_001313_010--Hb_005671_030 Hb_019654_120 Hb_019654_120 Hb_001313_010--Hb_019654_120 Hb_142068_020 Hb_142068_020 Hb_001313_010--Hb_142068_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.07995 0.0266794 0 0 0 0.0397597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0700314 0

CAGE analysis