Hb_007467_020

Information

Type -
Description -
Location Contig7467: 18045-23957
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007467_020 0.0 - - -
2 Hb_001313_010 0.0621329919 - - polyprotein [Ananas comosus]
3 Hb_178389_010 0.2658650747 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
4 Hb_019654_120 0.274317388 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
5 Hb_000656_130 0.2819396412 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
6 Hb_000454_020 0.2825683214 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_142068_020 0.2826941786 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
8 Hb_049014_010 0.2849533829 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_005671_030 0.2899065754 - - -
10 Hb_075481_010 0.2922583955 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
11 Hb_002019_010 0.304804836 - - -
12 Hb_001676_030 0.3140439159 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_122567_010 0.3143203088 - - -
14 Hb_001488_050 0.3148750383 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
15 Hb_003102_040 0.3152642822 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
16 Hb_002495_020 0.3218327647 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
17 Hb_187661_010 0.3359632432 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
18 Hb_000089_150 0.3451468003 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
19 Hb_000046_130 0.3461843951 - - Peroxidase 27 precursor, putative [Ricinus communis]
20 Hb_002240_030 0.3480335819 - - -

Gene co-expression network

sample Hb_007467_020 Hb_007467_020 Hb_001313_010 Hb_001313_010 Hb_007467_020--Hb_001313_010 Hb_178389_010 Hb_178389_010 Hb_007467_020--Hb_178389_010 Hb_019654_120 Hb_019654_120 Hb_007467_020--Hb_019654_120 Hb_000656_130 Hb_000656_130 Hb_007467_020--Hb_000656_130 Hb_000454_020 Hb_000454_020 Hb_007467_020--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_007467_020--Hb_142068_020 Hb_002019_010 Hb_002019_010 Hb_001313_010--Hb_002019_010 Hb_001313_010--Hb_178389_010 Hb_005671_030 Hb_005671_030 Hb_001313_010--Hb_005671_030 Hb_001313_010--Hb_019654_120 Hb_001313_010--Hb_142068_020 Hb_122567_010 Hb_122567_010 Hb_178389_010--Hb_122567_010 Hb_178389_010--Hb_019654_120 Hb_178389_010--Hb_000656_130 Hb_178389_010--Hb_000454_020 Hb_178389_010--Hb_142068_020 Hb_001676_030 Hb_001676_030 Hb_178389_010--Hb_001676_030 Hb_019654_120--Hb_122567_010 Hb_123104_010 Hb_123104_010 Hb_019654_120--Hb_123104_010 Hb_000395_100 Hb_000395_100 Hb_019654_120--Hb_000395_100 Hb_017111_010 Hb_017111_010 Hb_019654_120--Hb_017111_010 Hb_000656_130--Hb_000454_020 Hb_000656_130--Hb_142068_020 Hb_049014_010 Hb_049014_010 Hb_000656_130--Hb_049014_010 Hb_075481_010 Hb_075481_010 Hb_000656_130--Hb_075481_010 Hb_000656_130--Hb_122567_010 Hb_187661_010 Hb_187661_010 Hb_000656_130--Hb_187661_010 Hb_000454_020--Hb_142068_020 Hb_000454_020--Hb_049014_010 Hb_000454_020--Hb_075481_010 Hb_000454_020--Hb_122567_010 Hb_000454_020--Hb_187661_010 Hb_142068_020--Hb_049014_010 Hb_142068_020--Hb_075481_010 Hb_142068_020--Hb_122567_010 Hb_142068_020--Hb_187661_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279021 0 0 0 0 0.0704096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0612342 0

CAGE analysis