Hb_075481_010

Information

Type -
Description -
Location Contig75481: 14152-23407
Sequence    

Annotation

kegg
ID sly:104647507
description uncharacterized LOC104647507
nr
ID XP_010321238.1
description PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075481_010 0.0 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
2 Hb_049014_010 0.034141546 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000656_130 0.1093444691 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
4 Hb_000454_020 0.1159827313 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_142068_020 0.1171533652 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
6 Hb_122567_010 0.1581709839 - - -
7 Hb_002498_200 0.2484714558 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
8 Hb_178389_010 0.252893181 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
9 Hb_000011_030 0.25950059 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
10 Hb_000015_110 0.25950059 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
11 Hb_000029_040 0.25950059 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000030_110 0.25950059 - - -
13 Hb_000034_130 0.25950059 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000046_470 0.25950059 - - glutaredoxin, grx, putative [Ricinus communis]
15 Hb_000058_010 0.25950059 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000060_140 0.25950059 - - -
17 Hb_000070_020 0.25950059 - - -
18 Hb_000084_300 0.25950059 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
19 Hb_000152_720 0.25950059 - - -
20 Hb_000172_600 0.25950059 - - -

Gene co-expression network

sample Hb_075481_010 Hb_075481_010 Hb_049014_010 Hb_049014_010 Hb_075481_010--Hb_049014_010 Hb_000656_130 Hb_000656_130 Hb_075481_010--Hb_000656_130 Hb_000454_020 Hb_000454_020 Hb_075481_010--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_075481_010--Hb_142068_020 Hb_122567_010 Hb_122567_010 Hb_075481_010--Hb_122567_010 Hb_002498_200 Hb_002498_200 Hb_075481_010--Hb_002498_200 Hb_049014_010--Hb_000656_130 Hb_049014_010--Hb_000454_020 Hb_049014_010--Hb_142068_020 Hb_049014_010--Hb_122567_010 Hb_005671_030 Hb_005671_030 Hb_049014_010--Hb_005671_030 Hb_000656_130--Hb_000454_020 Hb_000656_130--Hb_142068_020 Hb_000656_130--Hb_122567_010 Hb_187661_010 Hb_187661_010 Hb_000656_130--Hb_187661_010 Hb_000454_020--Hb_142068_020 Hb_000454_020--Hb_122567_010 Hb_000454_020--Hb_187661_010 Hb_142068_020--Hb_122567_010 Hb_142068_020--Hb_187661_010 Hb_178389_010 Hb_178389_010 Hb_122567_010--Hb_178389_010 Hb_049438_010 Hb_049438_010 Hb_002498_200--Hb_049438_010 Hb_095413_040 Hb_095413_040 Hb_002498_200--Hb_095413_040 Hb_002498_200--Hb_122567_010 Hb_017836_010 Hb_017836_010 Hb_002498_200--Hb_017836_010 Hb_000926_220 Hb_000926_220 Hb_002498_200--Hb_000926_220 Hb_011909_090 Hb_011909_090 Hb_002498_200--Hb_011909_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.16397 0 0 0 0 0.02414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis