Hb_178389_010

Information

Type -
Description -
Location Contig178389: 4646-8044
Sequence    

Annotation

kegg
ID rcu:RCOM_1418540
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012067162.1
description PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
swissprot
ID Q681N2
description U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2
trembl
ID A0A067L0S1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03090 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178389_010 0.0 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
2 Hb_122567_010 0.1737208945 - - -
3 Hb_019654_120 0.2067520799 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
4 Hb_000656_130 0.2344080868 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
5 Hb_000454_020 0.2348033119 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_142068_020 0.2348916892 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
7 Hb_001676_030 0.2388791705 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_049014_010 0.2423343906 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_075481_010 0.252893181 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_005671_030 0.2622236221 - - -
11 Hb_005539_320 0.2653240775 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
12 Hb_007467_020 0.2658650747 - - -
13 Hb_000395_100 0.2708859805 - - Protein MYG1, putative [Ricinus communis]
14 Hb_002498_200 0.2744331796 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
15 Hb_123104_010 0.2776485763 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_011909_090 0.2827062649 transcription factor TF Family: NOZZLE PREDICTED: uncharacterized protein LOC105633212 [Jatropha curcas]
17 Hb_001313_010 0.2872459252 - - polyprotein [Ananas comosus]
18 Hb_087221_010 0.2874536241 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
19 Hb_001178_120 0.2881703929 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
20 Hb_187661_010 0.291407459 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_178389_010 Hb_178389_010 Hb_122567_010 Hb_122567_010 Hb_178389_010--Hb_122567_010 Hb_019654_120 Hb_019654_120 Hb_178389_010--Hb_019654_120 Hb_000656_130 Hb_000656_130 Hb_178389_010--Hb_000656_130 Hb_000454_020 Hb_000454_020 Hb_178389_010--Hb_000454_020 Hb_142068_020 Hb_142068_020 Hb_178389_010--Hb_142068_020 Hb_001676_030 Hb_001676_030 Hb_178389_010--Hb_001676_030 Hb_049014_010 Hb_049014_010 Hb_122567_010--Hb_049014_010 Hb_122567_010--Hb_000656_130 Hb_075481_010 Hb_075481_010 Hb_122567_010--Hb_075481_010 Hb_122567_010--Hb_000454_020 Hb_122567_010--Hb_142068_020 Hb_019654_120--Hb_122567_010 Hb_123104_010 Hb_123104_010 Hb_019654_120--Hb_123104_010 Hb_000395_100 Hb_000395_100 Hb_019654_120--Hb_000395_100 Hb_017111_010 Hb_017111_010 Hb_019654_120--Hb_017111_010 Hb_007467_020 Hb_007467_020 Hb_019654_120--Hb_007467_020 Hb_000656_130--Hb_000454_020 Hb_000656_130--Hb_142068_020 Hb_000656_130--Hb_049014_010 Hb_000656_130--Hb_075481_010 Hb_187661_010 Hb_187661_010 Hb_000656_130--Hb_187661_010 Hb_000454_020--Hb_142068_020 Hb_000454_020--Hb_049014_010 Hb_000454_020--Hb_075481_010 Hb_000454_020--Hb_187661_010 Hb_142068_020--Hb_049014_010 Hb_142068_020--Hb_075481_010 Hb_142068_020--Hb_187661_010 Hb_101040_010 Hb_101040_010 Hb_001676_030--Hb_101040_010 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_000071_200 Hb_000071_200 Hb_001676_030--Hb_000071_200 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61758 0 0.0353311 0.0254297 0.11517 0.443246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0669216 0

CAGE analysis