Hb_063433_010

Information

Type -
Description -
Location Contig63433: 348-4805
Sequence    

Annotation

kegg
ID tcc:TCM_034433
description Chloroplast channel forming outer membrane protein isoform 1
nr
ID XP_007018116.1
description Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FE54
description Chloroplast channel forming outer membrane protein isoform 2 OS=Theobroma cacao GN=TCM_034433 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_063433_010 0.0 - - Chloroplast channel forming outer membrane protein isoform 2 [Theobroma cacao]
2 Hb_000089_150 0.1737019653 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
3 Hb_005504_010 0.2441235978 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
4 Hb_001396_170 0.2776597004 - - unnamed protein product [Vitis vinifera]
5 Hb_101040_010 0.2986894981 - - -
6 Hb_032076_010 0.3031579252 - - -
7 Hb_000217_060 0.3069366418 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_062585_010 0.3088671503 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
9 Hb_012188_010 0.3127988064 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_000270_210 0.3134681947 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
11 Hb_001217_060 0.3199879658 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_001396_150 0.3238795046 transcription factor TF Family: M-type hypothetical protein POPTR_0001s13660g [Populus trichocarpa]
13 Hb_003929_060 0.3253403583 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
14 Hb_000521_310 0.3287153108 - - -
15 Hb_000071_200 0.3335906627 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
16 Hb_114261_010 0.3354666559 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
17 Hb_005389_110 0.3374100365 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
18 Hb_018344_010 0.3457869909 - - PREDICTED: endochitinase 2-like [Populus euphratica]
19 Hb_000579_150 0.3495121981 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
20 Hb_116125_010 0.3568703772 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]

Gene co-expression network

sample Hb_063433_010 Hb_063433_010 Hb_000089_150 Hb_000089_150 Hb_063433_010--Hb_000089_150 Hb_005504_010 Hb_005504_010 Hb_063433_010--Hb_005504_010 Hb_001396_170 Hb_001396_170 Hb_063433_010--Hb_001396_170 Hb_101040_010 Hb_101040_010 Hb_063433_010--Hb_101040_010 Hb_032076_010 Hb_032076_010 Hb_063433_010--Hb_032076_010 Hb_000217_060 Hb_000217_060 Hb_063433_010--Hb_000217_060 Hb_002019_010 Hb_002019_010 Hb_000089_150--Hb_002019_010 Hb_003929_060 Hb_003929_060 Hb_000089_150--Hb_003929_060 Hb_005389_110 Hb_005389_110 Hb_000089_150--Hb_005389_110 Hb_010521_010 Hb_010521_010 Hb_000089_150--Hb_010521_010 Hb_001313_010 Hb_001313_010 Hb_000089_150--Hb_001313_010 Hb_005504_010--Hb_101040_010 Hb_005504_010--Hb_032076_010 Hb_000071_200 Hb_000071_200 Hb_005504_010--Hb_000071_200 Hb_001676_030 Hb_001676_030 Hb_005504_010--Hb_001676_030 Hb_012188_010 Hb_012188_010 Hb_005504_010--Hb_012188_010 Hb_062585_010 Hb_062585_010 Hb_001396_170--Hb_062585_010 Hb_181975_010 Hb_181975_010 Hb_001396_170--Hb_181975_010 Hb_000574_150 Hb_000574_150 Hb_001396_170--Hb_000574_150 Hb_007978_020 Hb_007978_020 Hb_001396_170--Hb_007978_020 Hb_023647_040 Hb_023647_040 Hb_001396_170--Hb_023647_040 Hb_000003_390 Hb_000003_390 Hb_001396_170--Hb_000003_390 Hb_101040_010--Hb_001676_030 Hb_101040_010--Hb_000071_200 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090 Hb_032076_010--Hb_012188_010 Hb_001217_060 Hb_001217_060 Hb_032076_010--Hb_001217_060 Hb_032076_010--Hb_000071_200 Hb_000579_150 Hb_000579_150 Hb_032076_010--Hb_000579_150 Hb_032076_010--Hb_101040_010 Hb_157846_010 Hb_157846_010 Hb_000217_060--Hb_157846_010 Hb_001396_150 Hb_001396_150 Hb_000217_060--Hb_001396_150 Hb_049160_010 Hb_049160_010 Hb_000217_060--Hb_049160_010 Hb_084858_010 Hb_084858_010 Hb_000217_060--Hb_084858_010 Hb_007846_040 Hb_007846_040 Hb_000217_060--Hb_007846_040 Hb_134894_010 Hb_134894_010 Hb_000217_060--Hb_134894_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.232574 0.140324 0 0 0 0.154803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.109161 0

CAGE analysis