Hb_007044_030

Information

Type -
Description -
Location Contig7044: 6697-11840
Sequence    

Annotation

kegg
ID osa:9272363
description Os06g0273400
nr
ID NP_001174710.1
description Os06g0273400 [Oryza sativa Japonica Group]
swissprot
ID -
description -
trembl
ID Q5VN16
description Os06g0273400 protein OS=Oryza sativa subsp. japonica GN=P0676F10.8 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54997: 7907-8129 , PASA_asmbl_54998: 8159-8475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_030 0.0 - - Os06g0273400 [Oryza sativa Japonica Group]
2 Hb_007645_040 0.0829017915 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tachigali myrmecophila]
3 Hb_003963_030 0.0875931753 - - psbB [Jatropha curcas]
4 Hb_103255_010 0.0905999034 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_007595_030 0.0910688012 - - psbA gene product (chloroplast) [Silene noctiflora]
6 Hb_034168_060 0.0921432356 - - ribulose-1-5-bisphosphate carboxylase/oxygenase large subunit, partial (chloroplast) [Cucumis argenteus]
7 Hb_000388_020 0.0976061557 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
8 Hb_007645_050 0.0983127444 - - acetyl-CoA carboxylase beta subunit [Hevea brasiliensis]
9 Hb_088080_010 0.0990960658 - - photosystem I P700 chlorophyll a apoprotein A1 [Matelea biflora]
10 Hb_004138_020 0.1000954697 - - PREDICTED: cucumisin-like [Populus euphratica]
11 Hb_005087_020 0.1011001474 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_006331_010 0.1020369713 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_003407_050 0.1029945261 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_154980_010 0.1035422134 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
15 Hb_031194_030 0.1045111614 - - ribulose 1,5-bisphosphate carboxylase/oxygenase [Stackhousia minima]
16 Hb_003477_020 0.1054572013 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
17 Hb_106850_010 0.1056115261 - - photosystem II protein D2 [Lactuca sativa]
18 Hb_002835_420 0.1059567141 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
19 Hb_005018_050 0.1119916515 - - PREDICTED: licodione synthase-like [Jatropha curcas]
20 Hb_000938_050 0.1123833984 - - hypothetical protein JCGZ_09640 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_030 Hb_007044_030 Hb_007645_040 Hb_007645_040 Hb_007044_030--Hb_007645_040 Hb_003963_030 Hb_003963_030 Hb_007044_030--Hb_003963_030 Hb_103255_010 Hb_103255_010 Hb_007044_030--Hb_103255_010 Hb_007595_030 Hb_007595_030 Hb_007044_030--Hb_007595_030 Hb_034168_060 Hb_034168_060 Hb_007044_030--Hb_034168_060 Hb_000388_020 Hb_000388_020 Hb_007044_030--Hb_000388_020 Hb_004138_020 Hb_004138_020 Hb_007645_040--Hb_004138_020 Hb_003477_020 Hb_003477_020 Hb_007645_040--Hb_003477_020 Hb_007645_040--Hb_000388_020 Hb_007645_040--Hb_034168_060 Hb_003407_050 Hb_003407_050 Hb_007645_040--Hb_003407_050 Hb_054839_010 Hb_054839_010 Hb_007645_040--Hb_054839_010 Hb_007645_050 Hb_007645_050 Hb_003963_030--Hb_007645_050 Hb_088080_010 Hb_088080_010 Hb_003963_030--Hb_088080_010 Hb_003963_030--Hb_007595_030 Hb_154980_010 Hb_154980_010 Hb_003963_030--Hb_154980_010 Hb_031194_030 Hb_031194_030 Hb_003963_030--Hb_031194_030 Hb_002835_420 Hb_002835_420 Hb_003963_030--Hb_002835_420 Hb_103255_010--Hb_000388_020 Hb_072695_010 Hb_072695_010 Hb_103255_010--Hb_072695_010 Hb_000959_380 Hb_000959_380 Hb_103255_010--Hb_000959_380 Hb_006302_050 Hb_006302_050 Hb_103255_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_103255_010--Hb_003144_020 Hb_106850_010 Hb_106850_010 Hb_103255_010--Hb_106850_010 Hb_007595_030--Hb_088080_010 Hb_007595_030--Hb_007645_050 Hb_007595_030--Hb_031194_030 Hb_005018_050 Hb_005018_050 Hb_007595_030--Hb_005018_050 Hb_007595_030--Hb_003407_050 Hb_000696_200 Hb_000696_200 Hb_034168_060--Hb_000696_200 Hb_003228_060 Hb_003228_060 Hb_034168_060--Hb_003228_060 Hb_083242_040 Hb_083242_040 Hb_034168_060--Hb_083242_040 Hb_001715_050 Hb_001715_050 Hb_034168_060--Hb_001715_050 Hb_006331_010 Hb_006331_010 Hb_034168_060--Hb_006331_010 Hb_000388_020--Hb_054839_010 Hb_000388_020--Hb_006302_050 Hb_104509_010 Hb_104509_010 Hb_000388_020--Hb_104509_010 Hb_000388_020--Hb_106850_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025224 0.0507495 0.195981 0.302238 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0455218 0 0.0183573 8.68269

CAGE analysis