Hb_006040_140

Information

Type -
Description -
Location Contig6040: 135793-136666
Sequence    

Annotation

kegg
ID rcu:RCOM_2039330
description hypothetical protein
nr
ID YP_173443.1
description hypothetical protein NitaMp105 [Nicotiana tabacum]
swissprot
ID -
description -
trembl
ID Q5M9X0
description Uncharacterized protein OS=Nicotiana tabacum GN=orf160 PE=4 SV=1
Gene Ontology
ID GO:0005739
description hypothetical protein NitaMp105

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50722: 135986-136569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006040_140 0.0 - - hypothetical protein NitaMp105 [Nicotiana tabacum]
2 Hb_000672_130 0.1725790121 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
3 Hb_172486_010 0.1730709761 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_004643_020 0.1846106876 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
5 Hb_018105_010 0.1945432909 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
6 Hb_089305_040 0.2001503854 - - -
7 Hb_003796_010 0.2031179436 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_000138_180 0.2122824555 - - PREDICTED: uncharacterized protein LOC105131773 [Populus euphratica]
9 Hb_001300_090 0.2168924269 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
10 Hb_006827_010 0.2187941066 - - retrotransposon protein, putative, unclassified, expressed [Oryza sativa Japonica Group]
11 Hb_013420_070 0.2195741433 - - hypothetical protein EUGRSUZ_I01852 [Eucalyptus grandis]
12 Hb_002990_020 0.2198559541 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
13 Hb_001267_020 0.2210674081 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
14 Hb_004951_030 0.2295507372 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
15 Hb_029510_060 0.2303580016 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
16 Hb_006616_070 0.2310070177 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
17 Hb_149345_010 0.2341534643 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_004372_050 0.2359747291 - - putative receptor-like protein kinase [Morus notabilis]
19 Hb_001459_020 0.2363240477 - - ankyrin repeat protein [Bruguiera gymnorhiza]
20 Hb_167136_010 0.236574695 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_006040_140 Hb_006040_140 Hb_000672_130 Hb_000672_130 Hb_006040_140--Hb_000672_130 Hb_172486_010 Hb_172486_010 Hb_006040_140--Hb_172486_010 Hb_004643_020 Hb_004643_020 Hb_006040_140--Hb_004643_020 Hb_018105_010 Hb_018105_010 Hb_006040_140--Hb_018105_010 Hb_089305_040 Hb_089305_040 Hb_006040_140--Hb_089305_040 Hb_003796_010 Hb_003796_010 Hb_006040_140--Hb_003796_010 Hb_001300_090 Hb_001300_090 Hb_000672_130--Hb_001300_090 Hb_144838_010 Hb_144838_010 Hb_000672_130--Hb_144838_010 Hb_017640_010 Hb_017640_010 Hb_000672_130--Hb_017640_010 Hb_000672_130--Hb_004643_020 Hb_029510_060 Hb_029510_060 Hb_000672_130--Hb_029510_060 Hb_006827_010 Hb_006827_010 Hb_000672_130--Hb_006827_010 Hb_008484_020 Hb_008484_020 Hb_172486_010--Hb_008484_020 Hb_149345_010 Hb_149345_010 Hb_172486_010--Hb_149345_010 Hb_002620_040 Hb_002620_040 Hb_172486_010--Hb_002620_040 Hb_001459_020 Hb_001459_020 Hb_172486_010--Hb_001459_020 Hb_003291_030 Hb_003291_030 Hb_172486_010--Hb_003291_030 Hb_172486_010--Hb_029510_060 Hb_004643_020--Hb_003796_010 Hb_004643_020--Hb_089305_040 Hb_004951_030 Hb_004951_030 Hb_004643_020--Hb_004951_030 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_009393_110 Hb_009393_110 Hb_004643_020--Hb_009393_110 Hb_001999_050 Hb_001999_050 Hb_018105_010--Hb_001999_050 Hb_000311_110 Hb_000311_110 Hb_018105_010--Hb_000311_110 Hb_018105_010--Hb_004951_030 Hb_018105_010--Hb_009393_110 Hb_119832_010 Hb_119832_010 Hb_018105_010--Hb_119832_010 Hb_018105_010--Hb_004643_020 Hb_089305_040--Hb_003796_010 Hb_000951_070 Hb_000951_070 Hb_089305_040--Hb_000951_070 Hb_089305_040--Hb_001459_020 Hb_089305_040--Hb_009393_110 Hb_089305_040--Hb_004951_030 Hb_003796_010--Hb_004951_030 Hb_003796_010--Hb_009393_110 Hb_003796_010--Hb_000951_070 Hb_003796_010--Hb_119832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.244306 0.0303104 0.120882 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0924882 0 0 0 0.993815

CAGE analysis