Hb_005344_010

Information

Type -
Description -
Location Contig5344: 436-2457
Sequence    

Annotation

kegg
ID sot:102597679
description uncharacterized LOC102597679
nr
ID XP_006359158.1
description PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID K4AXD2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g073870.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005344_010 0.0 - - PREDICTED: uncharacterized protein LOC102597679 [Solanum tuberosum]
2 Hb_004010_020 0.292027994 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000703_300 0.3104414278 - - -
4 Hb_008758_010 0.3139083859 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_008556_020 0.3326831773 - - -
6 Hb_029508_010 0.3363573099 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
7 Hb_000046_220 0.340707534 - - -
8 Hb_008727_070 0.3413819357 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
9 Hb_030627_050 0.3457695882 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
10 Hb_005962_010 0.3488029451 - - -
11 Hb_000078_170 0.3580179789 - - -
12 Hb_003626_080 0.3668743545 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000427_080 0.3691522719 - - PREDICTED: uncharacterized protein LOC105775598 [Gossypium raimondii]
14 Hb_001235_100 0.3711583761 - - heat-shock protein, putative [Ricinus communis]
15 Hb_000891_080 0.3732104169 - - PREDICTED: TMV resistance protein N-like, partial [Populus euphratica]
16 Hb_001773_010 0.3825418227 - - -
17 Hb_001766_040 0.3829577329 - - chaperone clpb, putative [Ricinus communis]
18 Hb_010775_050 0.3840873634 - - -
19 Hb_010174_210 0.3844360307 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_000488_030 0.3885495022 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_005344_010 Hb_005344_010 Hb_004010_020 Hb_004010_020 Hb_005344_010--Hb_004010_020 Hb_000703_300 Hb_000703_300 Hb_005344_010--Hb_000703_300 Hb_008758_010 Hb_008758_010 Hb_005344_010--Hb_008758_010 Hb_008556_020 Hb_008556_020 Hb_005344_010--Hb_008556_020 Hb_029508_010 Hb_029508_010 Hb_005344_010--Hb_029508_010 Hb_000046_220 Hb_000046_220 Hb_005344_010--Hb_000046_220 Hb_007040_010 Hb_007040_010 Hb_004010_020--Hb_007040_010 Hb_004010_020--Hb_008758_010 Hb_000752_080 Hb_000752_080 Hb_004010_020--Hb_000752_080 Hb_061940_010 Hb_061940_010 Hb_004010_020--Hb_061940_010 Hb_186440_010 Hb_186440_010 Hb_004010_020--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_004010_020--Hb_097889_010 Hb_003038_150 Hb_003038_150 Hb_000703_300--Hb_003038_150 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001488_260 Hb_001488_260 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_000703_300--Hb_000330_080 Hb_008758_010--Hb_007040_010 Hb_008758_010--Hb_000752_080 Hb_012404_010 Hb_012404_010 Hb_008758_010--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_008758_010--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_008758_010--Hb_027890_010 Hb_005962_010 Hb_005962_010 Hb_008556_020--Hb_005962_010 Hb_119886_040 Hb_119886_040 Hb_008556_020--Hb_119886_040 Hb_008556_020--Hb_000078_170 Hb_011639_150 Hb_011639_150 Hb_008556_020--Hb_011639_150 Hb_002311_230 Hb_002311_230 Hb_008556_020--Hb_002311_230 Hb_007044_010 Hb_007044_010 Hb_008556_020--Hb_007044_010 Hb_168978_040 Hb_168978_040 Hb_029508_010--Hb_168978_040 Hb_025194_030 Hb_025194_030 Hb_029508_010--Hb_025194_030 Hb_002890_190 Hb_002890_190 Hb_029508_010--Hb_002890_190 Hb_005730_100 Hb_005730_100 Hb_029508_010--Hb_005730_100 Hb_085375_010 Hb_085375_010 Hb_029508_010--Hb_085375_010 Hb_097433_010 Hb_097433_010 Hb_029508_010--Hb_097433_010 Hb_000488_030 Hb_000488_030 Hb_000046_220--Hb_000488_030 Hb_029980_010 Hb_029980_010 Hb_000046_220--Hb_029980_010 Hb_079297_010 Hb_079297_010 Hb_000046_220--Hb_079297_010 Hb_000046_220--Hb_005730_100 Hb_000891_080 Hb_000891_080 Hb_000046_220--Hb_000891_080 Hb_002843_220 Hb_002843_220 Hb_000046_220--Hb_002843_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19606 0.344676 0 0 1.2843 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0569762 0.857523

CAGE analysis